# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.27e-12		
1zpvA	91	2.926	d.58.18.7	125475
2ehbD	143	6.050		
1skoB	130	9.519	d.110.7.1	105677
2cc6A	68	12.02	d.230.2.1	130218
1eaf	243	13.52		
1vetB	125	16.75	d.110.7.1	108554
1a7lA	389	18.89	c.94.1.1	35787
1v4pA	157	19.49	d.67.1.2	113533
1b5sA	242	20.40	c.43.1.1	32626
2zfdB	123	20.63		
2cz8A	69	22.48		
2ii3A	262	26.86		
1uliB	187	30.10	d.17.4.4	107923
1wbaA	175	32.31	b.42.4.1	25591
1dpbA	243	34.59	c.43.1.1	32618
2gdnA	267	36.37		
1mogA	67	37.10	d.230.2.1	85034
1t6lA	290	37.67	d.131.1.2,d.131.1.2	106574,106575
1y4oA	104	37.67		
1anf	370	39.60		
1k2yX	463	39.82	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68063,68064,68065,68066
2b95A	106	41.44		
1j27A	102	53.78	d.58.50.1	90778
1qq4A	198	54.15	b.47.1.1	25768
3bkpA	232	54.33		
1v7oA	165	54.70	d.67.1.2	100480
1a9eA	277	56.31	b.1.1.2,d.19.1.1	20757,38268
1xo8A	151	59.25	b.1.25.1	115698
1x89A	178	60.15	b.60.1.1	121799
1laxA	370	60.89	c.94.1.1	84576
1zndA	174	63.44	b.60.1.1	125380
2c9wA	169	63.51		
1qysA	106	71.96	k.41.1.1	96603
2go2A	163	72.38		
2agkA	260	72.94		
1ru0A	105	74.23	d.74.1.1	111937
2ifsA	169	76.76		
1ykdA	398	79.70		
2ra6A	166	80.66		
1sczA	233	81.62	c.43.1.1	98802
1b94A	244	81.91	c.52.1.2	33250
1u55A	188	82.16	d.278.1.1	107677
1n08A	163	82.62	b.43.5.1	79730
1b96A	244	83.84	c.52.1.2	33268
1l0oA	150	85.45	d.122.1.3	73403
2jqoA	108	85.93		
1vhsA	175	88.24	d.108.1.1	100698
2vjeA	64	89.67		
2e6rA	92	89.72