# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2jz5A 91 1.42e-15 1vkdA 338 2.054 b.67.2.4 108644 1zpvA 91 3.183 d.58.18.7 125475 1eagA 342 3.411 b.50.1.2 26826 2ehbD 143 3.426 1vhsA 175 3.966 d.108.1.1 100698 1a9eA 277 4.445 b.1.1.2,d.19.1.1 20757,38268 2cc6A 68 4.509 d.230.2.1 130218 1dzlA 505 5.426 b.121.6.1 23586 3bsoA 510 6.383 1z41A 338 6.534 c.1.4.1 124421 1u02A 239 6.745 c.108.1.15 107538 1dpbA 243 9.045 c.43.1.1 32618 1v33A 366 9.573 d.264.1.1 100278 1sczA 233 9.927 c.43.1.1 98802 2zfdB 123 10.07 2sak 121 12.27 1wy2A 351 12.44 2qezA 455 12.73 2jo6A 113 12.73 3bwaA 276 13.63 1qysA 106 13.99 k.41.1.1 96603 1nijA 318 14.24 c.37.1.10,d.237.1.1 85741,85742 1xo8A 151 14.85 b.1.25.1 115698 2v9lA 274 15.44 1x1iA 752 17.35 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1e7uA 961 17.46 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1eaf 243 17.85 1skoB 130 17.99 d.110.7.1 105677 2hq4A 161 18.39 1uliB 187 21.25 d.17.4.4 107923 1anf 370 21.49 2cz8A 69 21.67 1ms9A 648 22.81 b.29.1.15,b.68.1.1 85088,85089 1mogA 67 23.36 d.230.2.1 85034 1g71A 347 24.45 d.264.1.1 43268 2izpA 303 25.51 a.250.1.1 137826 1j27A 102 25.56 d.58.50.1 90778 1sfsA 240 26.96 c.1.8.8 98846 2ob3A 330 28.87 1a1oA 276 30.08 b.1.1.2,d.19.1.1 20751,38265 1miuA 738 31.30 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 79153,79154,79155,79156,79157 1b5sA 242 31.61 c.43.1.1 32626 2ghaA 382 33.86 1e5mA 416 34.43 c.95.1.1,c.95.1.1 58973,58974 1t6lA 290 35.17 d.131.1.2,d.131.1.2 106574,106575 2av4A 162 35.44 1vpbA 451 35.82 d.283.1.1 113950 2q18X 293 36.15 1xtmA 175 40.08 2dqaA 124 41.40 2ozlA 365 41.51 1rdr 461 42.97 1zsoA 164 45.72 b.166.1.1 125610 3prnA 289 45.90 f.4.3.1 43761 2b95A 106 46.62 1b1yA 500 47.83 c.1.8.1 28796 1qq4A 198 48.12 b.47.1.1 25768 2ys3A 137 48.39 1y56A 493 49.14 1a1nA 276 49.38 b.1.1.2,d.19.1.1 20755,38267 2e6rA 92 49.64 1jk7A 323 51.09 d.159.1.3 63144 1z5yE 149 57.57 c.47.1.10 124498 2ifsA 169 57.61 1bv1 159 60.85 1z45A 699 61.05 b.30.5.4,c.2.1.2 124427,124428 1m41A 380 61.12 c.1.16.4 78595 1cauB 184 62.04 b.82.1.2 28103 2fjtA 182 62.38 1rpnA 335 65.41 c.2.1.2 97708 3c0wA 235 65.97 2bg9E 370 66.93 1bvoA 175 67.99 b.2.5.3 22457 1ffkB 338 69.91 b.43.3.2 25719 2b7yA 182 70.68 1zndA 174 70.82 b.60.1.1 125380 2e4tA 519 70.83 1div 149 71.92 1h0bA 256 73.26 b.29.1.11 83422 1xdfA 157 74.05 d.129.3.1 121868 2f7lA 455 74.14 1nbaA 264 75.49 c.33.1.3 31753 2eenA 183 75.75 1xviA 275 76.45 c.108.1.10 116088 2a67A 167 78.99 1z3eB 73 79.05 a.60.3.1 124401 1w36C 1122 79.35 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1qycA 308 79.76 c.2.1.2 96581 1ukkA 142 80.04 d.227.1.1 99491 1nbwB 117 80.70 c.51.3.2 80396 2p8iA 117 82.40 d.58.55.1 139522 1ni5A 433 84.93 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2eiyA 308 85.27 1woqA 267 86.14 c.55.1.10,c.55.1.10 109462,109463 1x1fA 149 87.14 b.55.1.1 121579 1b94A 244 88.16 c.52.1.2 33250 1ypyA 184 88.49 2arrA 382 88.99 1couA 85 89.69 g.22.1.1 44896