# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	2.17e-13		
2ehbD	143	5.966		
1zpvA	91	6.469	d.58.18.7	125475
2zfdB	123	11.44		
2cc6A	68	14.07	d.230.2.1	130218
1eaf	243	19.04		
1a7lA	389	21.38	c.94.1.1	35787
1t6lA	290	22.21	d.131.1.2,d.131.1.2	106574,106575
1uliB	187	23.32	d.17.4.4	107923
1b5sA	242	27.62	c.43.1.1	32626
1skoB	130	32.24	d.110.7.1	105677
2cz8A	69	33.55		
1xo8A	151	34.92	b.1.25.1	115698
1mogA	67	36.63	d.230.2.1	85034
2ii3A	262	43.62		
2ew0A	192	44.43	d.310.1.1	132445
1k2yX	463	44.64	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68063,68064,68065,68066
1anf	370	44.70		
1v4pA	157	46.57	d.67.1.2	113533
1y4oA	104	47.46		
1qq4A	198	47.58	b.47.1.1	25768
2b95A	106	47.71		
1b94A	244	47.92	c.52.1.2	33250
1j27A	102	49.80	d.58.50.1	90778
1dpbA	243	50.34	c.43.1.1	32618
2gdnA	267	50.35		
3bkpA	232	55.30		
1wbaA	175	56.02	b.42.4.1	25591
1b96A	244	58.83	c.52.1.2	33268
2ifsA	169	58.88		
1eonA	245	59.25	c.52.1.2	33238
1vetB	125	62.03	d.110.7.1	108554
1vhsA	175	67.18	d.108.1.1	100698
1n08A	163	68.49	b.43.5.1	79730
1laxA	370	68.88	c.94.1.1	84576
1b97A	244	75.76	c.52.1.2	33252
1ukkA	142	79.10	d.227.1.1	99491
1div	149	84.20		
2q5wD	77	84.73		
2ohwA	133	86.08		
1qysA	106	86.11	k.41.1.1	96603
1v7oA	165	86.98	d.67.1.2	100480
2e6rA	92	88.10