# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	4.86e-11		
1xo8A	151	10.71	b.1.25.1	115698
2cc6A	68	11.22	d.230.2.1	130218
2ehbD	143	12.63		
1zpvA	91	14.77	d.58.18.7	125475
2ew0A	192	15.61	d.310.1.1	132445
1uliB	187	16.37	d.17.4.4	107923
1a7lA	389	23.90	c.94.1.1	35787
2cz8A	69	27.18		
2zfdB	123	34.06		
2gdnA	267	35.06		
1mogA	67	35.63	d.230.2.1	85034
2aj2A	208	39.12	d.310.1.1	126840
1anf	370	49.29		
1qq4A	198	52.57	b.47.1.1	25768
2hafA	211	52.80	d.310.1.1	136286
1skoB	130	54.78	d.110.7.1	105677
1eaf	243	55.92		
1vhsA	175	58.88	d.108.1.1	100698
1a9eA	277	60.59	b.1.1.2,d.19.1.1	20757,38268
2cjaA	522	63.57		
1jl0A	334	64.37	d.156.1.1	63155
2jqoA	108	73.62		
1vetB	125	75.93	d.110.7.1	108554
3bkpA	232	77.44		
1y4oA	104	79.40		
1b5sA	242	80.81	c.43.1.1	32626
1laxA	370	81.36	c.94.1.1	84576
2b95A	106	82.72		
3bxoA	239	83.41		
2agkA	260	84.21		
1qysA	106	87.91	k.41.1.1	96603