# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.27e-11		
2ehbD	143	9.905		
2cc6A	68	10.22	d.230.2.1	130218
1zpvA	91	11.15	d.58.18.7	125475
1xo8A	151	16.82	b.1.25.1	115698
1j27A	102	22.14	d.58.50.1	90778
1a7lA	389	22.82	c.94.1.1	35787
2cz8A	69	31.58		
1mogA	67	34.59	d.230.2.1	85034
1uliB	187	38.93	d.17.4.4	107923
2zfdB	123	43.17		
1y4oA	104	49.99		
2ew0A	192	50.30	d.310.1.1	132445
1anf	370	52.76		
1eaf	243	58.22		
2e6rA	92	59.69		
2q5wD	77	61.14		
1qwiA	143	67.21	d.227.1.1	96474
1b5sA	242	70.32	c.43.1.1	32626
2agkA	260	71.69		
1dxeA	256	71.81	c.1.12.5	29310
3bkpA	232	72.57		
1vhsA	175	72.76	d.108.1.1	100698
1div	149	74.40		
1v4pA	157	75.43	d.67.1.2	113533
1wbaA	175	76.53	b.42.4.1	25591
3bxoA	239	77.68		
1qysA	106	78.46	k.41.1.1	96603
1b96A	244	79.97	c.52.1.2	33268
2fqmA	75	81.13		
1b94A	244	81.32	c.52.1.2	33250
2b95A	106	82.85		
2cjaA	522	85.71		
2jmkA	111	87.41		
1skoB	130	87.87	d.110.7.1	105677
1qq4A	198	89.23	b.47.1.1	25768
1eonA	245	89.60	c.52.1.2	33238