# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	6.01e-13		
2cc6A	68	2.535	d.230.2.1	130218
1t6lA	290	5.748	d.131.1.2,d.131.1.2	106574,106575
1uliB	187	6.502	d.17.4.4	107923
2cz8A	69	7.190		
1eaf	243	8.140		
2cw9A	194	9.402	d.17.4.13	130920
2fxtA	192	9.599		
2vjeA	64	13.31		
1b5sA	242	14.19	c.43.1.1	32626
1f2tA	149	14.92	c.37.1.12	32373
1mogA	67	15.48	d.230.2.1	85034
1sczA	233	18.14	c.43.1.1	98802
2b95A	106	18.83		
2ehbD	143	21.75		
2zfdB	123	22.59		
1dpbA	243	22.62	c.43.1.1	32618
1p5vA	235	24.85	b.1.11.1,b.7.2.1	87812,87813
1bvoA	175	26.03	b.2.5.3	22457
2rhsB	800	27.20		
2ii3A	262	28.14		
1y4oA	104	29.30		
1a9eA	277	33.86	b.1.1.2,d.19.1.1	20757,38268
1b97A	244	37.05	c.52.1.2	33252
1eonA	245	39.24	c.52.1.2	33238
1x58A	62	40.57	a.4.1.1	121705
1b94A	244	40.89	c.52.1.2	33250
1k2yX	463	41.22	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68063,68064,68065,68066
1j27A	102	44.95	d.58.50.1	90778
1q40B	219	48.00	d.17.4.2	95771
2e6jA	112	48.47		
2acvA	463	50.74		
2aytA	237	51.00		
1iloA	77	51.85	c.47.1.1	66205
1n08A	163	53.64	b.43.5.1	79730
2al3A	90	58.36	d.15.1.2	126957
2dclA	127	60.25		
1igrA	478	60.26	c.10.2.5,c.10.2.5,g.3.9.1	30877,30878,44188
1b96A	244	63.03	c.52.1.2	33268
1y7rA	133	67.26	d.108.1.1	122716
2e6rA	92	67.57		
2hlsA	243	75.13		
2va8A	715	77.31		
1ro2A	216	79.31	d.264.1.2	97665
2f7lA	455	82.33		
2fipA	115	82.67		
1x4tA	92	83.18	a.2.15.1	121698
1lxkA	721	85.09	a.102.3.2,b.24.1.1,b.30.5.2	74331,74332,74333
3bwaA	276	86.14		
1vetB	125	88.92	d.110.7.1	108554
1h6qA	168	89.70	b.88.1.2	60692