# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.50e-14		
1uliB	187	6.284	d.17.4.4	107923
2cc6A	68	6.876	d.230.2.1	130218
3bxoA	239	14.26		
2jqoA	108	15.00		
1qysA	106	15.61	k.41.1.1	96603
1a9eA	277	16.83	b.1.1.2,d.19.1.1	20757,38268
1zroA	602	21.93	a.264.1.1,a.264.1.1	125551,125552
1a6zA	275	23.64	b.1.1.2,d.19.1.1	20781,38280
1wr2A	238	25.36		
2acvA	463	28.98		
2cz8A	69	29.12		
3bkpA	232	29.34		
1iv0A	98	38.24	c.55.3.8	90706
1n08A	163	45.00	b.43.5.1	79730
1mogA	67	45.37	d.230.2.1	85034
1t6lA	290	49.66	d.131.1.2,d.131.1.2	106574,106575
2eenA	183	52.34		
1b5sA	242	54.13	c.43.1.1	32626
1wdjA	187	55.61	c.52.1.27	114536
1trb	320	56.00		
3bwaA	276	56.51		
2h0uA	217	56.83		
1ewxA	146	58.52	c.47.1.10	33062
1fp3A	402	60.31	a.102.1.3	18842
1j27A	102	60.44	d.58.50.1	90778
1a7lA	389	61.54	c.94.1.1	35787
1nb9A	147	63.23	b.43.5.1	85515
1erw	105	63.31		
1gh2A	107	65.89	c.47.1.1	60515
1couA	85	66.40	g.22.1.1	44896
2ehbD	143	67.02		
2ii3A	262	69.97		
1qq4A	198	75.35	b.47.1.1	25768
2px6A	316	75.82		
2al3A	90	84.59	d.15.1.2	126957
1vhsA	175	85.02	d.108.1.1	100698
1dxeA	256	87.38	c.1.12.5	29310
1us8A	147	88.17	c.37.1.12	99859