# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	3.86e-06		
1wr2A	238	0.7414		
2bkyX	89	1.433	d.68.6.1	128717
2id1A	130	2.263		
1n13B	113	2.346		
1lq9A	112	2.810	d.58.4.3	78129
2hiqA	113	9.093	d.58.4.12	136529
2rhsA	294	9.916		
2g2kA	170	12.75		
1nrkA	328	13.44	b.44.2.1,d.250.1.1	92089,92090
2o5aA	125	13.76		
1mp9A	198	14.20	d.129.1.1,d.129.1.1	91385,91386
1v8cA	168	16.24	d.15.3.1,d.129.5.1	100495,100496
1wd6A	123	16.32	d.58.4.12	114525
1fnoA	417	16.49	d.58.19.1,c.56.5.4	70145,75841
1h0xA	100	17.57	d.68.6.1	76451
1jmsA	381	20.28	a.60.6.1,a.60.12.1,d.218.1.2	66889,75862,75863
1l4zB	136	21.06	d.15.5.1	77704
1d3uA	181	21.81	d.129.1.1,d.129.1.1	41290,41291
1pyaB	228	24.92		
1m85A	484	25.35	e.5.1.1	74578
2j5aA	110	25.83		
2yqzA	263	27.98		
1ew4A	106	28.19	d.82.2.1	40023
1p71A	94	29.70	a.55.1.1	87840
1nfjA	89	32.10	d.68.6.1	91866
2jdjA	105	32.37		
1nh9A	87	33.71	d.68.6.1	91878
1vmbA	140	41.09	d.58.14.1	113672
1pczA	191	41.85	d.129.1.1,d.129.1.1	41292,41293
2i8gA	151	42.96		
2rbbA	141	43.19		
1ufwA	95	43.56	d.58.7.1	99358
2uubJ	105	44.38	d.58.15.1	139941
1p27B	106	44.84	d.58.7.1	93908
1nqkA	381	46.87	c.1.16.4	92050
2h9uA	102	47.36		
2v8hA	474	48.04		
1fjgJ	105	48.74	d.58.15.1	39330
1gw5S	142	48.89	d.110.4.2	70633
1pjqA	457	50.86	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2rb9A	334	51.36		
2cz8A	69	51.67		
2bf5A	98	54.64	d.137.1.1	128405
2qg8A	163	57.82		
2a4xA	138	58.27	d.32.1.2	126166
1qqiA	104	63.21	a.4.6.1	16233
1qaxA	428	63.47	d.58.20.1,d.179.1.1	39376,42597
1u55A	188	63.91	d.278.1.1	107677
1tuhA	156	64.34	d.17.4.11	107345
1juvA	193	64.79	c.71.1.1	90912
1jw3A	140	65.09	d.208.1.1	67373
1vloA	381	65.96	b.44.2.1,d.250.1.1	108838,108839
2geyA	158	68.01		
1a4eA	488	69.27	e.5.1.1	42806
1vlyA	338	71.59	b.44.2.1,d.250.1.1	108871,108872
2vooA	193	71.72		
1vixA	420	74.22	c.56.5.4,d.58.19.1	100777,100778
2rhsB	800	74.62		
1owfB	94	76.08	a.55.1.1	87488
2oaiA	94	76.45		
1skoB	130	77.09	d.110.7.1	105677
1c9bB	180	77.48	d.129.1.1,d.129.1.1	41216,41217
2z1uA	343	80.87		
1q8rA	120	81.13	d.79.6.1	96225
2gviA	204	81.31		
2bg9E	370	81.59		
1kafA	108	82.58	d.199.1.1	68372
1kllA	130	84.23	d.32.1.2	72720
2cjaA	522	84.62		
1owfA	99	87.90	a.55.1.1	87487
2arfA	165	88.91		
2gxfA	142	88.98