# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.65e-11		
1n7hA	381	1.105	c.2.1.2	80250
2ehbD	143	3.247		
1o60A	292	6.067	c.1.10.4	92532
1sb8A	352	6.408	c.2.1.2	105410
2hrzA	342	8.233		
2cz8A	69	9.97		
2vafA	378	10.47		
2ux9A	69	10.47		
1rkxA	357	11.39	c.2.1.2	97631
1tu1A	148	16.10	d.107.1.3	107316
1r0uA	148	16.65	b.60.1.5	96741
2p71A	132	18.89	a.39.2.1	139516
1r6dA	337	19.13	c.2.1.2	97148
2e7vA	121	20.12		
3bdqA	110	20.84		
1a8yA	367	22.15	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
1j27A	102	23.02	d.58.50.1	90778
1fm0D	81	23.05	d.15.3.1	37642
2o09A	189	24.83		
1wvgA	359	25.45	c.2.1.2	121339
1nd4A	264	26.91	d.144.1.6	91815
2cc6A	68	30.31	d.230.2.1	130218
1oc2A	348	33.69	c.2.1.2	92765
2q5wD	77	34.45		
1kxoA	184	35.21	b.60.1.1	84475
2hdwA	367	40.36		
2p5yA	311	43.10		
2yvlA	248	44.05		
1z45A	699	45.38	b.30.5.4,c.2.1.2	124427,124428
1dpbA	243	46.65	c.43.1.1	32618
2af6A	258	47.78		
1euvA	221	48.02	d.3.1.7	37133
2i7cA	283	51.26		
2ca9A	148	51.56		
2pblA	262	52.65		
1vs1A	276	53.25		
2b95A	106	54.40		
2o4uX	334	57.63		
2cjaA	522	59.52		
2i4lA	458	59.60		
2bkrA	212	64.90	d.3.1.7	128710
1a3yA	149	65.23	b.60.1.1	27110
2yy7A	312	67.45		
1inlA	296	68.54	c.66.1.17	66220
1rz3A	201	68.80	c.37.1.6	98132
2a9gA	418	70.90	d.126.1.4	126435
2ii3A	262	71.46		
1vr6A	350	73.29	c.1.10.4	120439
1dcoA	104	75.80	d.74.1.1	39680
2av4A	162	78.95		
1dqeA	137	82.18	a.39.2.1	17388
2zfdB	123	83.53		
2cy7A	396	83.77		
1lkeA	184	85.47	b.60.1.1	84622
1fitA	147	86.80	d.13.1.1	37499