# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	4.06e-11		
1n7hA	381	1.277	c.2.1.2	80250
2ehbD	143	2.043		
2cz8A	69	3.972		
2ux9A	69	4.785		
2vafA	378	7.867		
1o60A	292	8.205	c.1.10.4	92532
1sb8A	352	9.250	c.2.1.2	105410
2hrzA	342	9.732		
2cc6A	68	11.96	d.230.2.1	130218
2e7vA	121	15.69		
1r6dA	337	16.34	c.2.1.2	97148
1tu1A	148	18.18	d.107.1.3	107316
1rkxA	357	18.61	c.2.1.2	97631
1wvgA	359	19.57	c.2.1.2	121339
1r0uA	148	20.26	b.60.1.5	96741
1oc2A	348	20.45	c.2.1.2	92765
1fm0D	81	24.67	d.15.3.1	37642
2oaaA	249	24.89		
1a8yA	367	26.88	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2q5wD	77	28.04		
1z45A	699	31.84	b.30.5.4,c.2.1.2	124427,124428
2av4A	162	32.71		
3bdqA	110	35.78		
2yy7A	312	36.08		
1j27A	102	38.07	d.58.50.1	90778
1nd4A	264	38.19	d.144.1.6	91815
2p5yA	311	39.40		
2i7cA	283	41.94		
2ohwA	133	42.26		
2p71A	132	42.88	a.39.2.1	139516
2o4uX	334	45.29		
1inlA	296	50.53	c.66.1.17	66220
2df8A	325	50.87		
1euvA	221	51.03	d.3.1.7	37133
2z1mA	345	51.70		
2b95A	106	52.49		
2zfdB	123	53.06		
2o09A	189	54.02		
2hdwA	367	54.18		
1qgvA	142	61.73	c.47.1.8	33056
1fitA	147	62.53	d.13.1.1	37499
2ca9A	148	62.57		
3b59A	310	62.98		
1vs1A	276	63.23		
2i4lA	458	64.87		
1f08A	148	65.31	d.89.1.2	59564
1wloA	136	69.29		
1g2qA	187	69.90	c.61.1.1	65117
3c61A	314	72.68		
2dreA	180	73.58		
2abyA	146	74.14		
1wpnA	188	74.43	c.107.1.1	114826
1gtdA	85	75.28	d.284.1.1	76344
2a9gA	418	77.59	d.126.1.4	126435
1ypyA	184	78.52		
1rz3A	201	79.74	c.37.1.6	98132
1t2aA	375	80.58	c.2.1.2	99078
1r9wA	145	81.74	d.89.1.2	97264
2cy7A	396	84.39		
1kxoA	184	84.40	b.60.1.1	84475
2agkA	260	85.31		
2jmkA	111	85.42