# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	6.50e-12		
1o60A	292	0.9530	c.1.10.4	92532
1n7hA	381	1.797	c.2.1.2	80250
2hrzA	342	4.182		
2q5wD	77	4.358		
2ehbD	143	4.360		
1fm0D	81	4.910	d.15.3.1	37642
3bdqA	110	6.015		
2vafA	378	8.946		
2ux9A	69	10.28		
1sb8A	352	12.19	c.2.1.2	105410
2cc6A	68	13.20	d.230.2.1	130218
1dcoA	104	15.63	d.74.1.1	39680
1r6dA	337	15.69	c.2.1.2	97148
3c61A	314	15.69		
2a9gA	418	15.90	d.126.1.4	126435
2cz8A	69	16.75		
1rkxA	357	16.79	c.2.1.2	97631
2p5yA	311	22.35		
1r0uA	148	22.95	b.60.1.5	96741
1oc2A	348	23.71	c.2.1.2	92765
2p71A	132	25.83	a.39.2.1	139516
2i7cA	283	26.78		
1r7lA	110	28.40	d.277.1.1	104837
1vs1A	276	30.68		
1euvA	221	31.58	d.3.1.7	37133
1wvgA	359	31.99	c.2.1.2	121339
1jeoA	180	34.46	c.80.1.3	66611
1z45A	699	34.49	b.30.5.4,c.2.1.2	124427,124428
1a8yA	367	35.38	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
1vr6A	350	35.79	c.1.10.4	120439
2oaaA	249	37.23		
1m3sA	186	43.39	c.80.1.3	78573
2p62A	241	43.52		
2dreA	180	45.89		
1kxoA	184	46.34	b.60.1.1	84475
2yxyA	115	47.35		
1ypyA	184	47.36		
1fitA	147	47.50	d.13.1.1	37499
1nd4A	264	47.99	d.144.1.6	91815
2av4A	162	50.54		
2o09A	189	51.26		
2ci1A	275	51.94		
2dqaA	124	53.57		
1th0A	226	55.65	d.3.1.7	106903
1vimA	200	60.89	c.80.1.3	100758
1g2qA	187	61.52	c.61.1.1	65117
1j27A	102	65.21	d.58.50.1	90778
2b95A	106	65.56		
2pocA	367	66.77		
2pspA	106	69.23	g.16.1.1,g.16.1.1	44730,44731
1gtdA	85	69.39	d.284.1.1	76344
1ru0A	105	69.84	d.74.1.1	111937
2sicI	107	70.12	d.84.1.1	40031
2df8A	325	71.80		
1dpbA	243	72.04	c.43.1.1	32618
2ohwA	133	74.47		
1gmuA	143	75.17	b.107.1.1,d.58.38.1	65335,65336
1xqaA	113	76.02	d.32.1.2	115837
2jmkA	111	78.41		
1t2aA	375	79.27	c.2.1.2	99078
1avwB	171	81.31	b.42.4.1	25599
1yp2A	451	86.98	b.81.1.4,c.68.1.6	123798,123799
1n13B	113	89.71