# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	2.55e-12		
1n7hA	381	0.3208	c.2.1.2	80250
2hrzA	342	0.9467		
2ehbD	143	1.513		
3bdqA	110	1.699		
1o60A	292	3.065	c.1.10.4	92532
1sb8A	352	4.113	c.2.1.2	105410
1rkxA	357	4.901	c.2.1.2	97631
1r0uA	148	5.730	b.60.1.5	96741
2vafA	378	7.498		
2p71A	132	7.671	a.39.2.1	139516
2cz8A	69	7.892		
2ux9A	69	8.506		
1a8yA	367	9.889	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
1r6dA	337	10.85	c.2.1.2	97148
1wvgA	359	12.95	c.2.1.2	121339
1fm0D	81	14.02	d.15.3.1	37642
2a9gA	418	16.35	d.126.1.4	126435
1oc2A	348	16.82	c.2.1.2	92765
2cc6A	68	17.64	d.230.2.1	130218
2af6A	258	18.81		
2q5wD	77	20.57		
1z45A	699	20.98	b.30.5.4,c.2.1.2	124427,124428
2av4A	162	21.15		
1euvA	221	21.21	d.3.1.7	37133
2p5yA	311	23.01		
1dcoA	104	24.90	d.74.1.1	39680
1fitA	147	25.86	d.13.1.1	37499
1dpbA	243	28.60	c.43.1.1	32618
1t6lA	290	32.63	d.131.1.2,d.131.1.2	106574,106575
2oaaA	249	32.65		
2yy7A	312	34.58		
1nfp	228	37.87		
2e7vA	121	38.16		
2zfdB	123	38.21		
2isnA	364	40.30		
2df8A	325	40.32		
2ii3A	262	40.38		
3bwaA	276	41.21		
2dj5A	133	41.65	c.92.1.3	131536
2bkrA	212	42.41	d.3.1.7	128710
1g2qA	187	42.76	c.61.1.1	65117
1t2aA	375	43.33	c.2.1.2	99078
2yrrA	353	45.01		
2a4vA	159	50.78	c.47.1.10	126163
1vs1A	276	51.04		
1r1qA	100	51.97	d.93.1.1	104763
2b95A	106	52.59		
1qysA	106	53.05	k.41.1.1	96603
1ru0A	105	53.72	d.74.1.1	111937
1jeoA	180	54.40	c.80.1.3	66611
2hdvA	111	55.27		
1fqtA	112	55.62	b.33.1.1	24441
1a3yA	149	62.79	b.60.1.1	27110
1ypxA	375	66.11		
1eq2A	310	66.85	c.2.1.2	29814
1m3sA	186	67.33	c.80.1.3	78573
1gtdA	85	69.40	d.284.1.1	76344
2z1mA	345	70.48		
2vjvA	159	72.83		
2yvlA	248	74.55		
1qgvA	142	75.51	c.47.1.8	33056
2cjaA	522	76.03		
1gvnB	287	81.27	c.37.1.21	76354
1j27A	102	81.36	d.58.50.1	90778
2ohwA	133	81.89		
1js3A	486	82.37	c.67.1.6	67215
1jyrA	96	82.71	d.93.1.1	71969
1a6q	382	84.82		
1zroA	602	88.99	a.264.1.1,a.264.1.1	125551,125552
1t6sA	162	89.78	a.4.5.60,a.4.5.60	112271,112272