# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.67e-12		
1n7hA	381	0.1966	c.2.1.2	80250
2hrzA	342	0.4858		
2ehbD	143	0.7597		
3bdqA	110	2.058		
1o60A	292	2.084	c.1.10.4	92532
1sb8A	352	2.761	c.2.1.2	105410
1rkxA	357	3.258	c.2.1.2	97631
2p71A	132	3.790	a.39.2.1	139516
1wvgA	359	5.674	c.2.1.2	121339
2vafA	378	8.628		
1r6dA	337	9.018	c.2.1.2	97148
1oc2A	348	11.23	c.2.1.2	92765
2ux9A	69	11.38		
1z45A	699	11.44	b.30.5.4,c.2.1.2	124427,124428
2cz8A	69	12.30		
2p5yA	311	13.00		
1a8yA	367	13.63	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
1r0uA	148	14.39	b.60.1.5	96741
1fm0D	81	15.82	d.15.3.1	37642
2yy7A	312	17.82		
1fitA	147	22.70	d.13.1.1	37499
2q5wD	77	22.93		
1t2aA	375	23.56	c.2.1.2	99078
2af6A	258	25.25		
2cc6A	68	26.97	d.230.2.1	130218
2df8A	325	31.47		
2av4A	162	32.73		
2zfdB	123	33.21		
1vs1A	276	34.57		
2a9gA	418	35.87	d.126.1.4	126435
2isnA	364	36.52		
1nfp	228	36.53		
1dcoA	104	36.67	d.74.1.1	39680
3bwaA	276	38.23		
2yrrA	353	40.96		
2e7vA	121	41.74		
1euvA	221	42.73	d.3.1.7	37133
2z1mA	345	43.11		
1ypxA	375	43.24		
1n2sA	299	43.49	c.2.1.2	79857
1js3A	486	44.68	c.67.1.6	67215
1eq2A	310	46.72	c.2.1.2	29814
2hdvA	111	47.94		
1qysA	106	48.94	k.41.1.1	96603
2ii3A	262	51.40		
1g2qA	187	51.44	c.61.1.1	65117
2b95A	106	52.76		
1j27A	102	53.82	d.58.50.1	90778
2yvlA	248	56.15		
1dpbA	243	57.45	c.43.1.1	32618
1t6lA	290	58.45	d.131.1.2,d.131.1.2	106574,106575
1r1qA	100	60.12	d.93.1.1	104763
2cjaA	522	61.31		
1ru0A	105	66.38	d.74.1.1	111937
1dqeA	137	67.00	a.39.2.1	17388
2oaaA	249	68.70		
1wyuA	438	71.36	c.67.1.7	121452
1xfrA	128	71.70		
1rz3A	201	72.23	c.37.1.6	98132
2ohwA	133	72.47		
1a8y	367	76.77		
3b59A	310	78.46		
1i1dA	161	79.81	d.108.1.1	61526
1gtdA	85	83.08	d.284.1.1	76344
1vr6A	350	83.60	c.1.10.4	120439
2dj5A	133	85.12	c.92.1.3	131536
1kewA	361	85.24	c.2.1.2	68544
1qgvA	142	89.15	c.47.1.8	33056
1lr0A	129	89.25	d.212.1.1	74213
1a3yA	149	89.58	b.60.1.1	27110
1gvnB	287	89.94	c.37.1.21	76354
1px5A	349	90.00	a.160.1.2,d.218.1.6	95277,95278