# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	2.43e-12		
1n7hA	381	0.1830	c.2.1.2	80250
2hrzA	342	0.6836		
2ehbD	143	1.073		
1o60A	292	2.116	c.1.10.4	92532
3bdqA	110	2.229		
1sb8A	352	2.844	c.2.1.2	105410
1rkxA	357	4.232	c.2.1.2	97631
2p71A	132	4.719	a.39.2.1	139516
2vafA	378	7.756		
1r6dA	337	8.224	c.2.1.2	97148
1wvgA	359	9.700	c.2.1.2	121339
1oc2A	348	11.26	c.2.1.2	92765
2ux9A	69	12.20		
2cz8A	69	12.55		
1a8yA	367	14.40	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2p5yA	311	16.49		
1z45A	699	16.92	b.30.5.4,c.2.1.2	124427,124428
1fm0D	81	18.96	d.15.3.1	37642
2yy7A	312	20.11		
2af6A	258	21.13		
1t2aA	375	22.20	c.2.1.2	99078
1fitA	147	23.00	d.13.1.1	37499
2zfdB	123	25.44		
2cc6A	68	26.07	d.230.2.1	130218
2av4A	162	26.91		
2q5wD	77	30.22		
1euvA	221	31.70	d.3.1.7	37133
1r0uA	148	33.94	b.60.1.5	96741
1vs1A	276	37.27		
2df8A	325	37.33		
2z1mA	345	37.35		
1t6lA	290	37.39	d.131.1.2,d.131.1.2	106574,106575
1dcoA	104	37.44	d.74.1.1	39680
1g2qA	187	38.04	c.61.1.1	65117
2yrrA	353	38.73		
2isnA	364	43.93		
2a9gA	418	44.41	d.126.1.4	126435
2cjaA	522	47.29		
2hdvA	111	48.06		
1nfp	228	49.64		
1ypxA	375	49.84		
1n2sA	299	52.11	c.2.1.2	79857
2yvlA	248	55.68		
1eq2A	310	56.79	c.2.1.2	29814
1r1qA	100	57.37	d.93.1.1	104763
1ru0A	105	59.25	d.74.1.1	111937
1js3A	486	59.65	c.67.1.6	67215
2e7vA	121	60.42		
2dj5A	133	61.62	c.92.1.3	131536
2i7cA	283	64.18		
2b95A	106	65.15		
1vr6A	350	65.44	c.1.10.4	120439
2ohwA	133	65.65		
1px5A	349	71.98	a.160.1.2,d.218.1.6	95277,95278
2ii3A	262	72.12		
1qgvA	142	72.58	c.47.1.8	33056
1i1dA	161	74.42	d.108.1.1	61526
1wyuA	438	75.92	c.67.1.7	121452
1mzgA	146	80.31	d.224.1.1	79696
1qysA	106	84.81	k.41.1.1	96603
1dpbA	243	85.10	c.43.1.1	32618
2a4vA	159	85.41	c.47.1.10	126163
1j27A	102	86.15	d.58.50.1	90778
2oaaA	249	86.33		
2bkrA	212	88.93	d.3.1.7	128710
1a6q	382	89.59