# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	7.13e-11		
2ehbD	143	2.596		
2cjaA	522	7.132		
1o60A	292	9.484	c.1.10.4	92532
2yxyA	115	12.11		
2cz8A	69	24.96		
1r7lA	110	26.06	d.277.1.1	104837
1h3lA	87	28.18	a.177.1.1	76639
1a8yA	367	28.57	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2oocA	113	31.49		
1dcoA	104	31.96	d.74.1.1	39680
1kid	203	33.72		
2dkaA	544	34.31		
2ux9A	69	41.68		
1kidA	203	42.39	c.8.5.1	30771
3c61A	314	44.83		
1n8fA	350	45.61	c.1.10.4	85397
1ddwA	120	46.65	b.55.1.4	27001
2ccyA	128	46.75	a.24.3.2	16544
1iurA	88	47.91	a.2.3.1	90704
1of8A	370	47.98	c.1.10.4	92819
2cm1A	260	50.14		
1euvA	221	53.38	d.3.1.7	37133
3bdqA	110	54.55		
1m5wA	243	55.74	c.1.24.1	84836
2cc6A	68	56.57	d.230.2.1	130218
1txoA	237	61.39	d.219.1.1	112781
2b81A	323	61.81		
1j7gA	144	64.62	c.110.1.1	84130
2f7lA	455	70.71		
2q4vA	170	70.85	d.108.1.1	139878
2ifsA	169	75.85		
1t5jA	313	75.85	a.209.1.1	99125
1z21A	112	76.73	a.243.1.2	124367
1sb8A	352	78.66	c.2.1.2	105410
2a4xA	138	81.21	d.32.1.2	126166
1w8gA	234	81.70		
2j82A	240	81.97		
2bkyX	89	83.79	d.68.6.1	128717
1ypxA	375	85.93		
2oaaA	249	86.50		
2i6cA	160	88.00	d.108.1.1	137095