# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	3.88e-12		
2ehbD	143	1.243		
1n7hA	381	1.755	c.2.1.2	80250
3bdqA	110	5.572		
1r0uA	148	9.126	b.60.1.5	96741
2ux9A	69	9.919		
2oaaA	249	12.89		
2cz8A	69	14.17		
1o60A	292	14.23	c.1.10.4	92532
1euvA	221	19.72	d.3.1.7	37133
1a8yA	367	19.91	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2hrzA	342	20.06		
1dpbA	243	22.37	c.43.1.1	32618
1sb8A	352	23.11	c.2.1.2	105410
2vafA	378	23.26		
2i7cA	283	25.69		
1rkxA	357	26.69	c.2.1.2	97631
2a9gA	418	29.18	d.126.1.4	126435
1fm0D	81	29.35	d.15.3.1	37642
2q5wD	77	30.03		
2b95A	106	30.45		
3c4aA	381	30.60		
1z45A	699	34.98	b.30.5.4,c.2.1.2	124427,124428
2av4A	162	35.00		
1th0A	226	40.60	d.3.1.7	106903
1wvgA	359	40.88	c.2.1.2	121339
1dcoA	104	42.67	d.74.1.1	39680
2ii3A	262	44.53		
1lr0A	129	47.81	d.212.1.1	74213
1j27A	102	48.48	d.58.50.1	90778
2yvlA	248	49.54		
2yxyA	115	52.21		
2dj5A	133	52.46	c.92.1.3	131536
1fitA	147	55.77	d.13.1.1	37499
1fqtA	112	56.40	b.33.1.1	24441
1wyuA	438	56.87	c.67.1.7	121452
2cc6A	68	57.77	d.230.2.1	130218
1tu1A	148	58.60	d.107.1.3	107316
2dreA	180	58.74		
3bwaA	276	59.78		
1t6lA	290	62.38	d.131.1.2,d.131.1.2	106574,106575
1g2qA	187	65.29	c.61.1.1	65117
1a3yA	149	67.25	b.60.1.1	27110
1vs1A	276	69.19		
1q23A	219	71.32	c.43.1.1	104481
1vetB	125	71.92	d.110.7.1	108554
2df8A	325	73.25		
1r9wA	145	75.25	d.89.1.2	97264
1r6dA	337	75.40	c.2.1.2	97148
2qh9A	184	75.46		
1jeoA	180	75.53	c.80.1.3	66611
2ouaA	188	77.16		
1b4bA	71	77.73	d.74.2.1	39718
1iurA	88	81.39	a.2.3.1	90704
1ypyA	184	81.71		
1fjrA	195	84.25	b.102.1.1	59855
2o4uX	334	85.14		
2bkrA	212	85.81	d.3.1.7	128710
1nd4A	264	86.97	d.144.1.6	91815
1t6sA	162	87.16	a.4.5.60,a.4.5.60	112271,112272
3c61A	314	87.34		
2gzbA	166	87.82