# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	4.84e-12		
1n7hA	381	0.3343	c.2.1.2	80250
2ehbD	143	0.8775		
1ty0A	211	3.111	b.40.2.2,d.15.6.1	107440,107441
1dzlA	505	3.974	b.121.6.1	23586
2o4uX	334	5.077		
1o60A	292	5.704	c.1.10.4	92532
3bdqA	110	6.288		
1dpbA	243	7.237	c.43.1.1	32618
2isnA	364	7.850		
2reeA	224	8.202		
2hi4A	495	8.336		
2eabA	899	9.839		
2av4A	162	10.27		
2c40A	312	10.95		
1a8yA	367	11.58	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2izpA	303	11.73	a.250.1.1	137826
1e7uA	961	12.49	a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4	19147,23182,37630,41710
2i7cA	283	12.88		
1s9rA	410	13.16	d.126.1.4	98758
2ux9A	69	14.86		
2bvfA	459	15.26		
1rkxA	357	15.84	c.2.1.2	97631
2qezA	455	16.59		
2eiyA	308	16.69		
1j7gA	144	18.05	c.110.1.1	84130
1jk7A	323	19.14	d.159.1.3	63144
2dqaA	124	20.16		
2cz8A	69	20.63		
1oc2A	348	23.04	c.2.1.2	92765
1bvoA	175	23.88	b.2.5.3	22457
2ganA	190	24.02	d.108.1.1	134889
2oaaA	249	24.19		
1r6dA	337	25.53	c.2.1.2	97148
2v8oA	444	26.20		
2qh9A	184	26.42		
2cmuA	342	26.75		
1arbA	268	26.79	b.47.1.1	25766
1vpbA	451	27.30	d.283.1.1	113950
2mev1	277	27.85		
1l5oA	356	30.11	c.39.1.1	77711
1kxoA	184	31.09	b.60.1.1	84475
1sczA	233	31.35	c.43.1.1	98802
2b95A	106	33.09		
2yvlA	248	34.91		
1wy2A	351	35.34		
2cc6A	68	35.47	d.230.2.1	130218
1wvgA	359	35.75	c.2.1.2	121339
1m2kA	249	36.22	c.31.1.5	84754
1inlA	296	36.80	c.66.1.17	66220
1o4yA	288	40.21	b.29.1.2	92473
1xc1A	309	40.26	c.94.1.1	109543
2qrlA	394	40.39		
1qysA	106	41.28	k.41.1.1	96603
2ob3A	330	42.56		
1j27A	102	43.06	d.58.50.1	90778
3bwaA	276	46.26		
2i4lA	458	46.40		
1dqeA	137	46.46	a.39.2.1	17388
1a3yA	149	47.16	b.60.1.1	27110
3bsoA	510	49.61		
3c4aA	381	51.78		
2hrzA	342	53.18		
1z45A	699	53.25	b.30.5.4,c.2.1.2	124427,124428
1cs0A	1073	55.09	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18558,31487,31673,31674,41518,41519
2b5nA	323	56.07		
2af6A	258	56.45		
2hdvA	111	56.76		
2zfdB	123	57.12		
1fm0D	81	57.55	d.15.3.1	37642
1ypxA	375	61.44		
2hq4A	161	63.17		
1w8gA	234	63.47		
1fitA	147	63.77	d.13.1.1	37499
1g2qA	187	63.79	c.61.1.1	65117
1gyhA	318	65.12	b.67.2.1	70757
2oufA	94	66.39		
1wqaA	455	66.83		
1wzlA	585	66.86	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1r1qA	100	66.89	d.93.1.1	104763
2hz5A	106	67.89		
1th0A	226	68.43	d.3.1.7	106903
2al3A	90	68.78	d.15.1.2	126957
1te5A	257	69.10	d.153.1.1	106795
2gqwA	408	69.58		
2r00A	336	70.33		
1nqkA	381	70.60	c.1.16.4	92050
1q79A	514	71.07	a.160.1.1,d.218.1.3,d.58.16.1	104548,104549,104550
1t6sA	162	71.52	a.4.5.60,a.4.5.60	112271,112272
1zk5A	176	72.65		
2nooA	502	72.99		
1yhtA	367	73.41	c.1.8.6	123213
1xh3A	276	74.34	b.1.1.2,d.19.1.1	115287,115288
2o5fA	171	74.95		
1t2aA	375	76.60	c.2.1.2	99078
1j2rA	199	76.62	c.33.1.3	90788
1dcoA	104	77.50	d.74.1.1	39680
2hdwA	367	79.35		
2bbdA	350	80.29		
1vr6A	350	80.68	c.1.10.4	120439
1t94A	459	81.19	d.240.1.1,e.8.1.7	106701,106702
1nrjA	158	81.63	d.110.4.4	86124
1m5wA	243	82.38	c.1.24.1	84836
2arrA	382	84.50		
1vs1A	276	84.57		
1eswA	500	84.68	c.1.8.1	59500
2qiyA	154	85.12		
1jkeA	145	86.34	c.110.1.1	66791
2glfA	450	87.27		
1xtmA	175	88.10		
1orrA	347	88.21	c.2.1.2	93460
1f1gA	154	88.27	b.1.8.1	76153