# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.61e-11		
2ehbD	143	0.6079		
1n7hA	381	1.109	c.2.1.2	80250
3bdqA	110	6.158		
1o60A	292	7.438	c.1.10.4	92532
1r0uA	148	8.309	b.60.1.5	96741
2ux9A	69	10.67		
2hrzA	342	12.82		
2a9gA	418	14.24	d.126.1.4	126435
2cz8A	69	14.35		
1sb8A	352	14.59	c.2.1.2	105410
2vafA	378	17.80		
1fm0D	81	24.08	d.15.3.1	37642
1a8yA	367	25.00	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2av4A	162	26.71		
1dpbA	243	26.74	c.43.1.1	32618
2i7cA	283	29.83		
1rkxA	357	29.98	c.2.1.2	97631
2q5wD	77	30.37		
1wvgA	359	34.38	c.2.1.2	121339
1euvA	221	36.49	d.3.1.7	37133
1z45A	699	37.10	b.30.5.4,c.2.1.2	124427,124428
1g2qA	187	38.65	c.61.1.1	65117
1r6dA	337	39.96	c.2.1.2	97148
2yvlA	248	40.37		
2zfdB	123	41.50		
2cc6A	68	42.87	d.230.2.1	130218
2df8A	325	43.77		
3bwaA	276	43.77		
2b95A	106	44.35		
1vs1A	276	44.93		
1j27A	102	46.87	d.58.50.1	90778
2ii3A	262	54.43		
2ci1A	275	54.58		
1dcoA	104	58.11	d.74.1.1	39680
2yxyA	115	59.10		
1vr6A	350	62.81	c.1.10.4	120439
1oc2A	348	67.52	c.2.1.2	92765
2p71A	132	69.54	a.39.2.1	139516
2p5yA	311	78.07		
1wyuA	438	78.16	c.67.1.7	121452
1iurA	88	78.41	a.2.3.1	90704
1fitA	147	80.42	d.13.1.1	37499
2oaaA	249	81.36		
1dqeA	137	81.88	a.39.2.1	17388
1tu1A	148	82.81	d.107.1.3	107316
1j2rA	199	83.52	c.33.1.3	90788
1nd4A	264	87.24	d.144.1.6	91815
1i1dA	161	88.58	d.108.1.1	61526