# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	5.82e-12		
1n7hA	381	1.075	c.2.1.2	80250
2ehbD	143	1.229		
3bdqA	110	2.788		
2ux9A	69	7.736		
1o60A	292	9.704	c.1.10.4	92532
1r0uA	148	11.40	b.60.1.5	96741
2cz8A	69	11.47		
2hrzA	342	13.56		
2a9gA	418	13.90	d.126.1.4	126435
1rkxA	357	14.41	c.2.1.2	97631
2vafA	378	16.91		
1sb8A	352	17.36	c.2.1.2	105410
2av4A	162	22.50		
2df8A	325	23.09		
1r6dA	337	23.38	c.2.1.2	97148
1wvgA	359	28.49	c.2.1.2	121339
2p71A	132	28.93	a.39.2.1	139516
1z45A	699	30.32	b.30.5.4,c.2.1.2	124427,124428
2cc6A	68	31.88	d.230.2.1	130218
1a8yA	367	31.93	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
1fm0D	81	32.39	d.15.3.1	37642
3bwaA	276	36.34		
2isnA	364	36.49		
2o4uX	334	37.35		
2af6A	258	37.41		
1kxoA	184	43.06	b.60.1.1	84475
1qgvA	142	44.19	c.47.1.8	33056
1vs1A	276	44.98		
1vr6A	350	45.05	c.1.10.4	120439
2b95A	106	50.31		
1oc2A	348	52.83	c.2.1.2	92765
1ypyA	184	53.60		
2q5wD	77	54.28		
2zfdB	123	54.88		
1g2qA	187	55.21	c.61.1.1	65117
1wloA	136	55.37		
1jeoA	180	56.95	c.80.1.3	66611
1tu1A	148	58.82	d.107.1.3	107316
2p5yA	311	59.23		
1fitA	147	64.85	d.13.1.1	37499
2r3uA	211	68.88		
2e6jA	112	69.35		
1euvA	221	69.41	d.3.1.7	37133
1eq2A	310	71.88	c.2.1.2	29814
2ohwA	133	77.05		
1dcoA	104	84.23	d.74.1.1	39680
1dpbA	243	84.88	c.43.1.1	32618
2yvlA	248	86.43		
1xh3A	276	89.73	b.1.1.2,d.19.1.1	115287,115288