# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.66e-11		
1n7hA	381	0.6896	c.2.1.2	80250
2ehbD	143	0.9784		
3bdqA	110	3.408		
2hrzA	342	3.944		
1o60A	292	4.112	c.1.10.4	92532
1sb8A	352	8.732	c.2.1.2	105410
2ux9A	69	9.138		
2a9gA	418	10.13	d.126.1.4	126435
1rkxA	357	11.45	c.2.1.2	97631
2df8A	325	12.17		
2cz8A	69	12.22		
1r6dA	337	12.77	c.2.1.2	97148
1wvgA	359	13.68	c.2.1.2	121339
2p71A	132	15.71	a.39.2.1	139516
1z45A	699	16.66	b.30.5.4,c.2.1.2	124427,124428
2cc6A	68	17.22	d.230.2.1	130218
2p5yA	311	18.33		
1fm0D	81	21.21	d.15.3.1	37642
1oc2A	348	25.98	c.2.1.2	92765
2av4A	162	26.25		
2vafA	378	26.27		
2isnA	364	30.19		
1eq2A	310	31.49	c.2.1.2	29814
1kxoA	184	33.28	b.60.1.1	84475
1a8yA	367	33.83	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2q5wD	77	35.91		
1vr6A	350	38.60	c.1.10.4	120439
1jeoA	180	38.80	c.80.1.3	66611
1g2qA	187	40.98	c.61.1.1	65117
2af6A	258	45.09		
1fitA	147	46.03	d.13.1.1	37499
1wpnA	188	46.80	c.107.1.1	114826
2o4uX	334	46.82		
1dcoA	104	47.35	d.74.1.1	39680
1m3sA	186	52.83	c.80.1.3	78573
1vs1A	276	53.92		
2zfdB	123	54.12		
2yy7A	312	54.48		
1r0uA	148	56.02	b.60.1.5	96741
1euvA	221	57.36	d.3.1.7	37133
2jmkA	111	63.14		
2b95A	106	65.26		
2yxyA	115	67.06		
1qgvA	142	71.08	c.47.1.8	33056
1rz3A	201	74.50	c.37.1.6	98132
2i7cA	283	77.10		
3bwaA	276	77.47		
2ohwA	133	77.55