# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	5.27e-12		
1n7hA	381	0.3581	c.2.1.2	80250
2ehbD	143	1.334		
3bdqA	110	1.875		
2hrzA	342	2.205		
1rkxA	357	4.824	c.2.1.2	97631
1o60A	292	4.829	c.1.10.4	92532
1r6dA	337	7.830	c.2.1.2	97148
1wvgA	359	9.290	c.2.1.2	121339
1z45A	699	10.00	b.30.5.4,c.2.1.2	124427,124428
2cz8A	69	11.49		
2ux9A	69	11.50		
1sb8A	352	14.34	c.2.1.2	105410
1fm0D	81	16.24	d.15.3.1	37642
2df8A	325	16.49		
2vafA	378	16.64		
1oc2A	348	18.02	c.2.1.2	92765
2p5yA	311	20.81		
1vs1A	276	22.35		
2p71A	132	22.48	a.39.2.1	139516
2q5wD	77	22.90		
1kxoA	184	29.99	b.60.1.1	84475
2cc6A	68	30.25	d.230.2.1	130218
2a9gA	418	32.34	d.126.1.4	126435
1vr6A	350	34.84	c.1.10.4	120439
2yy7A	312	37.67		
2af6A	258	38.19		
1fitA	147	39.69	d.13.1.1	37499
2i7cA	283	40.97		
2isnA	364	42.34		
1dcoA	104	43.78	d.74.1.1	39680
1a8yA	367	44.02	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
1jeoA	180	44.36	c.80.1.3	66611
1r0uA	148	45.22	b.60.1.5	96741
2p62A	241	47.71		
2o4uX	334	48.23		
1g2qA	187	48.52	c.61.1.1	65117
1eq2A	310	50.58	c.2.1.2	29814
2sicI	107	55.18	d.84.1.1	40031
2cjaA	522	60.17		
2av4A	162	61.18		
2b95A	106	61.48		
2zfdB	123	62.19		
2yxyA	115	62.81		
2z1mA	345	66.29		
1dpbA	243	67.00	c.43.1.1	32618
1m3sA	186	69.39	c.80.1.3	78573
2oaaA	249	70.21		
2e7vA	121	75.70		
2pk3A	321	77.65		
1t2aA	375	79.54	c.2.1.2	99078
1jwoA	97	79.56	d.93.1.1	63310
1qgvA	142	79.70	c.47.1.8	33056
1fqtA	112	80.60	b.33.1.1	24441
1wpnA	188	83.76	c.107.1.1	114826
1inlA	296	87.80	c.66.1.17	66220