# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	6.27e-09		
2ehbD	143	4.133		
2b95A	106	5.777		
2cz8A	69	7.037		
2ux9A	69	7.804		
1t6lA	290	14.06	d.131.1.2,d.131.1.2	106574,106575
2dclA	127	14.71		
2cc6A	68	17.20	d.230.2.1	130218
1dpbA	243	18.40	c.43.1.1	32618
1sczA	233	24.28	c.43.1.1	98802
1ve4A	206	24.84	c.94.1.1	120012
2oufA	94	27.30		
3bdqA	110	27.94		
1b7yB	785	31.05	a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,b.153.1.1	16301,16302,25312,39311,40780,41456
2acyA	98	34.58	d.58.10.1	39298
2yxyA	115	36.05		
1tu1A	148	37.58	d.107.1.3	107316
2hz5A	106	45.56		
3craA	265	46.83		
2atrA	138	48.25	d.108.1.1	127305
3bd3A	112	49.49		
2fp7B	172	49.98	b.47.1.3	133899
2rhsB	800	50.32		
1kjwA	295	51.40	b.34.2.1,c.37.1.1	68643,68644
2j59M	168	52.05		
2acy	98	52.29		
2vafA	378	55.79		
2fomB	185	56.33	b.47.1.3	133884
2ii3A	262	58.40		
1je5A	206	59.98	b.40.4.7	62909
1urrA	102	60.49	d.58.10.1	107998
1h2kA	349	63.51	b.82.2.6	76572
2e6jA	112	67.22		
1z8sA	146	68.77		
2o9gA	234	70.29		
1pjhA	280	72.30	c.14.1.3	94761
1kid	203	72.76		
2bkyX	89	78.12	d.68.6.1	128717
1j0aA	325	80.31	c.79.1.1	83871
1zlhB	75	80.34		
1fxrA	64	80.99	d.58.1.4	38993
1vetB	125	82.56	d.110.7.1	108554
1n4aA	252	83.01	c.92.2.2	85317
180lA	164	83.03	d.2.1.3	36867
1kuxA	207	85.65	d.108.1.1	73021
2zfdB	123	87.59