# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.70e-10		
3bdqA	110	6.489		
2ux9A	69	6.564		
1euvA	221	8.180	d.3.1.7	37133
2yxyA	115	8.378		
2cz8A	69	8.554		
2ehbD	143	11.65		
1zroA	602	21.66	a.264.1.1,a.264.1.1	125551,125552
2ntxA	365	22.10		
1dxeA	256	28.48	c.1.12.5	29310
1r0uA	148	28.63	b.60.1.5	96741
2plgA	163	29.83		
2cc6A	68	31.37	d.230.2.1	130218
1iurA	88	38.70	a.2.3.1	90704
2bkrA	212	42.89	d.3.1.7	128710
2pblA	262	43.51		
1xfrA	128	47.09		
1nrwA	288	49.80	c.108.1.10	86128
2ywvA	244	49.95		
1o60A	292	52.06	c.1.10.4	92532
2q0yA	153	54.08		
2p71A	132	59.31	a.39.2.1	139516
2a9gA	418	59.86	d.126.1.4	126435
1m32A	366	60.85	c.67.1.3	78508
1tu1A	148	63.37	d.107.1.3	107316
2yrrA	353	65.42		
1dcoA	104	70.97	d.74.1.1	39680
2vafA	378	72.43		
2o9cA	342	72.74		
1ru0A	105	76.26	d.74.1.1	111937
1khcA	147	79.59	b.34.9.2	68608
1zb9A	143	81.52		
1eokA	290	82.92	c.1.8.5	28991
2ii3A	262	83.08		
1rkxA	357	83.88	c.2.1.2	97631
1th0A	226	87.61	d.3.1.7	106903