# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2jz5A 91 4.33e-05 1n13B 113 4.730 2bkyX 89 7.102 d.68.6.1 128717 2rhsA 294 7.248 1mp9A 198 9.303 d.129.1.1,d.129.1.1 91385,91386 1kr4A 125 11.28 d.58.5.2 72889 2oaaA 249 13.31 2qz8A 149 19.26 1vlpA 441 20.91 d.41.2.2,c.1.17.2 108840,108841 2cz8A 69 21.18 2cc6A 68 21.49 d.230.2.1 130218 2cveA 191 21.74 d.14.1.11,d.58.11.2 130869,130870 2id1A 130 22.08 3c0wA 235 24.13 1ry9A 145 25.46 d.198.1.1 98094 2a4xA 138 27.79 d.32.1.2 126166 2rbbA 141 28.28 1sgvA 316 28.90 b.122.1.1,d.265.1.2 98858,98859 1dqaA 467 29.96 d.58.20.1,d.179.1.1 39364,42585 2joqA 91 31.51 1m85A 484 31.73 e.5.1.1 74578 1ysjA 404 32.21 c.56.5.4,d.58.19.1 123975,123976 1fjgJ 105 32.90 d.58.15.1 39330 2bg9E 370 33.59 1mgtA 174 33.87 a.4.2.1,c.55.7.1 16078,33753 2h9uA 102 37.34 2f7lA 455 38.12 2qwvA 208 39.43 2h6dA 276 40.33 2ux9A 69 42.18 3c96A 415 42.20 2e7vA 121 42.85 1vloA 381 43.79 b.44.2.1,d.250.1.1 108838,108839 1fnoA 417 44.40 d.58.19.1,c.56.5.4 70145,75841 1ukuA 102 44.70 d.58.5.2 99533 2v8hA 474 45.08 2o5aA 125 45.67 1p1lA 102 46.90 d.58.5.2 87695 1v8cA 168 48.68 d.15.3.1,d.129.5.1 100495,100496 1yx2A 365 49.63 1u55A 188 51.40 d.278.1.1 107677 1aisA 182 51.46 d.129.1.1,d.129.1.1 41288,41289 1r7mA 235 51.59 d.95.2.1,d.95.2.1 111713,111714 2uubJ 105 52.56 d.58.15.1 139941 2ek0A 90 53.25 3pviA 157 53.59 c.52.1.6 33300 2rb9A 334 57.83 1ew4A 106 59.27 d.82.2.1 40023 1p5dX 463 59.96 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2q79A 93 60.63 1ufwA 95 61.58 d.58.7.1 99358 1oscA 126 62.79 d.58.5.2 93490 2pliA 91 63.20 1wd6A 123 63.44 d.58.4.12 114525 1ysrA 150 63.53 d.122.1.3 123981 1qwlA 505 65.17 e.5.1.1 96483 1bowA 159 65.92 d.60.1.1 39528 2olnA 397 66.28 1cg2A 393 66.66 c.56.5.4,d.58.19.1 33844,39360 2i8gA 151 68.66 3ckwA 304 70.29 1vlyA 338 70.49 b.44.2.1,d.250.1.1 108871,108872 2z1uA 343 71.10 1xneA 113 71.80 b.122.1.6 115579 1lq9A 112 73.06 d.58.4.3 78129 2pe8A 105 73.31 1gw5S 142 73.76 d.110.4.2 70633 1b7yA 350 76.24 d.104.1.1 40776 1ia8A 289 76.89 d.144.1.7 62112 1tp6A 128 77.08 d.17.4.12 107184 2b1xB 172 77.77 d.17.4.4 127677 1m7sA 484 79.01 e.5.1.1 74574 1btnA 106 79.22 b.55.1.1 26952 1pytA 94 79.55 d.58.3.1 39064 1mw7A 240 80.04 e.39.1.1 79557 2r4fA 441 80.66 2vooA 193 81.35 2j01Q 141 83.10 2dnrA 91 83.18 2zfhA 179 83.23 1f2tB 148 84.31 2r2zA 93 84.34 1btn 106 85.46 1h3qA 140 85.55 d.110.4.3 76652 2hiqA 113 85.90 d.58.4.12 136529 1vmbA 140 87.05 d.58.14.1 113672 1l8rA 101 89.79 a.6.1.4 73700