# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	4.25e-11		
2ehbD	143	0.6220		
1o60A	292	6.042	c.1.10.4	92532
1qgvA	142	7.472	c.47.1.8	33056
1mogA	67	9.881	d.230.2.1	85034
2cz8A	69	9.896		
1pqnA	127	12.19	c.47.1.8	95025
3bevA	274	13.79		
2dqaA	124	17.49		
2ux9A	69	18.65		
1j2rA	199	18.74	c.33.1.3	90788
2cc6A	68	21.20	d.230.2.1	130218
1dcoA	104	21.42	d.74.1.1	39680
2zfdB	123	22.11		
2bkrA	212	23.10	d.3.1.7	128710
2afcA	168	23.70	c.50.1.2	126676
2in3A	216	27.49		
2nscA	109	33.37		
1mq4A	272	39.67	d.144.1.7	91391
2yrxA	451	40.29		
1n4wA	504	44.97	c.3.1.2,d.16.1.1	91676,91677
2q5wD	77	45.41		
1ru0A	105	45.90	d.74.1.1	111937
1dpbA	243	45.92	c.43.1.1	32618
1u58A	253	47.27		
2pspA	106	49.49	g.16.1.1,g.16.1.1	44730,44731
1f08A	148	51.67	d.89.1.2	59564
1xbsA	149	54.11		
1y4oA	104	54.55		
1a6zA	275	55.12	b.1.1.2,d.19.1.1	20781,38280
2o09A	189	55.30		
1ofwA	296	56.14	a.138.1.1	92850
2a1hA	365	56.32	e.17.1.1	125997
2ew0A	192	57.58	d.310.1.1	132445
2e7vA	121	57.79		
1vs1A	276	59.65		
1ekfA	365	60.21	e.17.1.1	59445
2jmkA	111	60.40		
1wloA	136	61.54		
1pjqA	457	61.84	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1qnaA	200	65.57	d.129.1.1,d.129.1.1	41226,41227
2ii3A	262	67.80		
1erzA	303	67.93	d.160.1.2	59498
1euvA	221	71.72	d.3.1.7	37133
1f06A	320	72.33	c.2.1.3,d.81.1.3	59556,59557
1uliB	187	73.20	d.17.4.4	107923
2ra6A	166	77.61		
2fg1A	158	86.88	c.50.1.2	133400
1qg7A	67	89.04	d.9.1.1	37449
2ogtA	498	89.15