# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.38e-11		
2ehbD	143	1.939		
1qgvA	142	4.541	c.47.1.8	33056
1mogA	67	8.469	d.230.2.1	85034
2cz8A	69	9.020		
1pqnA	127	10.03	c.47.1.8	95025
1o60A	292	10.04	c.1.10.4	92532
3bevA	274	17.12		
2dqaA	124	18.41		
2ux9A	69	20.96		
1f08A	148	23.45	d.89.1.2	59564
2cc6A	68	23.77	d.230.2.1	130218
1qnaA	200	24.53	d.129.1.1,d.129.1.1	41226,41227
1a6zA	275	28.03	b.1.1.2,d.19.1.1	20781,38280
2afcA	168	28.71	c.50.1.2	126676
2q5wD	77	30.50		
1r9wA	145	31.68	d.89.1.2	97264
1j2rA	199	33.84	c.33.1.3	90788
2e7vA	121	35.61		
2bkrA	212	37.05	d.3.1.7	128710
2nscA	109	38.72		
2yrxA	451	42.01		
1dcoA	104	42.85	d.74.1.1	39680
1mq4A	272	43.02	d.144.1.7	91391
1n4wA	504	44.56	c.3.1.2,d.16.1.1	91676,91677
1erzA	303	45.72	d.160.1.2	59498
1t17A	148	46.85	d.129.3.6	112215
1ofwA	296	48.73	a.138.1.1	92850
1wloA	136	49.24		
2jmkA	111	51.19		
2ogtA	498	52.73		
2ohwA	133	54.89		
2b4rO	345	56.84	c.2.1.3,d.81.1.1	127845,127846
2zfdB	123	59.57		
1pjqA	457	61.50	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2f7lA	455	61.98		
1u5dA	108	66.78	b.55.1.1	119536
2b1xB	172	69.51	d.17.4.4	127677
1vs1A	276	71.79		
1u58A	253	72.78		
1uliB	187	75.26	d.17.4.4	107923
1bxkA	355	83.90	c.2.1.2	29803
1sqwA	188	85.27	b.122.1.1,d.17.6.3	119033,119034
2dreA	180	86.16		
1vixA	420	88.02	c.56.5.4,d.58.19.1	100777,100778
2dtcA	126	89.17