# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	6.97e-12		
1o60A	292	0.7924	c.1.10.4	92532
2ehbD	143	1.906		
2q5wD	77	4.828		
1qgvA	142	4.920	c.47.1.8	33056
2dqaA	124	6.121		
1dcoA	104	6.848	d.74.1.1	39680
1pqnA	127	8.373	c.47.1.8	95025
1mogA	67	10.74	d.230.2.1	85034
2cc6A	68	11.96	d.230.2.1	130218
1a9xA	1058	17.52	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503
3bevA	274	17.82		
2cz8A	69	17.84		
1n4wA	504	18.88	c.3.1.2,d.16.1.1	91676,91677
2pspA	106	22.91	g.16.1.1,g.16.1.1	44730,44731
1vs1A	276	22.99		
2ux9A	69	23.75		
1ru0A	105	24.85	d.74.1.1	111937
1erzA	303	25.44	d.160.1.2	59498
2iugA	120	25.94		
1r7lA	110	27.33	d.277.1.1	104837
2e1bA	216	29.03		
1r44A	202	29.27	d.65.1.4	104787
1y44A	320	34.17	d.157.1.7	122608
2yvqA	143	35.56		
2ogtA	498	36.34		
2bkrA	212	36.82	d.3.1.7	128710
2ci1A	275	36.91		
2afcA	168	36.97	c.50.1.2	126676
1bxkA	355	37.38	c.2.1.2	29803
2zfdB	123	38.30		
1qnaA	200	46.50	d.129.1.1,d.129.1.1	41226,41227
2yrxA	451	47.59		
1je0A	236	53.68	c.56.2.1	66581
1fm0D	81	55.81	d.15.3.1	37642
1u5dA	108	55.87	b.55.1.1	119536
1gmuA	143	56.74	b.107.1.1,d.58.38.1	65335,65336
1ofwA	296	57.68	a.138.1.1	92850
1y4oA	104	58.12		
2nscA	109	59.16		
3cj8A	236	59.74		
1vimA	200	62.82	c.80.1.3	100758
1u58A	253	65.84		
2oaaA	249	67.05		
1a3wA	500	68.60	b.58.1.1,c.1.12.1,c.49.1.1	27060,29288,33142
1e6yB	433	69.96	a.89.1.1,d.58.31.2	18535,39453
2d9rA	104	70.76	b.129.2.1	131350
1j27A	102	72.36	d.58.50.1	90778
1e8gA	560	72.75	d.58.32.1,d.145.1.1	39455,41718
1mkeA	152	72.96	b.55.1.4	79231
1we9A	64	73.31	g.50.1.2	114549
2fg1A	158	79.73	c.50.1.2	133400
1j2rA	199	80.27	c.33.1.3	90788
2ra6A	166	81.45		
3cla	213	85.86		
2djkA	133	86.35	c.47.1.2	131548
1tigA	94	87.36	d.68.1.1	39566
1xbsA	149	89.84