# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.07e-11		
2ehbD	143	0.7905		
1qgvA	142	3.338	c.47.1.8	33056
1o60A	292	5.861	c.1.10.4	92532
2bkrA	212	10.44	d.3.1.7	128710
2cz8A	69	10.59		
1dcoA	104	10.99	d.74.1.1	39680
1pqnA	127	12.15	c.47.1.8	95025
1erzA	303	12.80	d.160.1.2	59498
3bevA	274	14.84		
2dqaA	124	19.70		
2in3A	216	21.66		
2cc6A	68	22.22	d.230.2.1	130218
2zfdB	123	23.08		
2ux9A	69	23.19		
1n4wA	504	23.20	c.3.1.2,d.16.1.1	91676,91677
1mq4A	272	24.84	d.144.1.7	91391
1ru0A	105	26.16	d.74.1.1	111937
1mogA	67	26.91	d.230.2.1	85034
1anfA	370	29.45	c.94.1.1	35776
1dpbA	243	29.90	c.43.1.1	32618
2q5wD	77	30.78		
2nscA	109	31.04		
1euvA	221	33.47	d.3.1.7	37133
1xbsA	149	34.00		
1a8yA	367	35.15	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2ra6A	166	39.24		
2ii3A	262	41.59		
2afcA	168	43.03	c.50.1.2	126676
1j2rA	199	44.30	c.33.1.3	90788
1r1qA	100	45.86	d.93.1.1	104763
1t17A	148	46.13	d.129.3.6	112215
1jyrA	96	48.02	d.93.1.1	71969
1y4oA	104	50.03		
2a1hA	365	58.05	e.17.1.1	125997
2fg1A	158	58.42	c.50.1.2	133400
1bj7A	156	59.23	b.60.1.1	27113
1v7oA	165	60.34	d.67.1.2	100480
1et9A	204	61.48	b.40.2.2,d.15.6.1	25204,37793
1kay	381	61.64		
1zfpE	98	61.87	d.93.1.1	40465
1sfxA	109	62.74	a.4.5.50	105505
1a8y	367	63.03		
1bupA	386	63.33	c.55.1.1,c.55.1.1	33377,33378
1r44A	202	65.22	d.65.1.4	104787
1qysA	106	67.37	k.41.1.1	96603
1ofwA	296	68.24	a.138.1.1	92850
1gh2A	107	71.08	c.47.1.1	60515
1vetB	125	72.15	d.110.7.1	108554
1a6zA	275	72.51	b.1.1.2,d.19.1.1	20781,38280
2b95A	106	75.00		
1gheA	177	75.12	d.108.1.1	76222
1vs1A	276	76.75		
1qnaA	200	76.87	d.129.1.1,d.129.1.1	41226,41227
2pspA	106	78.91	g.16.1.1,g.16.1.1	44730,44731
2av4A	162	82.41		
2e1bA	216	83.31		
1ekfA	365	85.42	e.17.1.1	59445
2o09A	189	85.95