# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	3.02e-11		
2ehbD	143	0.3906		
1qgvA	142	3.931	c.47.1.8	33056
1o60A	292	4.498	c.1.10.4	92532
1pqnA	127	10.10	c.47.1.8	95025
2cz8A	69	10.78		
2zfdB	123	12.56		
2dqaA	124	14.86		
1mogA	67	17.19	d.230.2.1	85034
1dcoA	104	18.19	d.74.1.1	39680
2cc6A	68	19.25	d.230.2.1	130218
2bkrA	212	22.93	d.3.1.7	128710
2afcA	168	23.09	c.50.1.2	126676
1anfA	370	23.65	c.94.1.1	35776
2ux9A	69	24.65		
2in3A	216	28.13		
2nscA	109	28.40		
2q5wD	77	33.64		
1xbsA	149	34.15		
1j2rA	199	34.99	c.33.1.3	90788
1n4wA	504	36.25	c.3.1.2,d.16.1.1	91676,91677
1ru0A	105	36.32	d.74.1.1	111937
1a8yA	367	36.45	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
1erzA	303	37.58	d.160.1.2	59498
1vs1A	276	41.15		
2fg1A	158	42.79	c.50.1.2	133400
1r44A	202	46.95	d.65.1.4	104787
2ra6A	166	47.65		
1gtdA	85	49.22	d.284.1.1	76344
3bevA	274	59.68		
2av4A	162	59.94		
1dpbA	243	64.77	c.43.1.1	32618
2ii3A	262	67.45		
1a8y	367	68.23		
1mq4A	272	69.38	d.144.1.7	91391
1u58A	253	69.43		
2ew0A	192	71.23	d.310.1.1	132445
2pspA	106	72.41	g.16.1.1,g.16.1.1	44730,44731
2ogtA	498	74.59		
1r1qA	100	75.28	d.93.1.1	104763
1a28A	256	77.84	a.123.1.1	19290
1qysA	106	79.11	k.41.1.1	96603
1bxkA	355	79.89	c.2.1.2	29803
2nyiA	195	81.21		
1a6q	382	84.25		
2i9uA	439	84.90		
1sfxA	109	84.91	a.4.5.50	105505
2yrxA	451	85.31		
2i9dA	217	87.35