# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.48e-11		
2ehbD	143	0.4870		
1qgvA	142	2.555	c.47.1.8	33056
1o60A	292	4.349	c.1.10.4	92532
1pqnA	127	6.635	c.47.1.8	95025
2cz8A	69	11.59		
2dqaA	124	15.28		
1dcoA	104	18.98	d.74.1.1	39680
2bkrA	212	19.27	d.3.1.7	128710
2afcA	168	19.27	c.50.1.2	126676
1mogA	67	19.50	d.230.2.1	85034
2zfdB	123	19.61		
2cc6A	68	23.37	d.230.2.1	130218
2nscA	109	24.14		
2in3A	216	25.38		
1xbsA	149	25.94		
2ux9A	69	28.64		
1j2rA	199	30.29	c.33.1.3	90788
1anfA	370	31.22	c.94.1.1	35776
1ru0A	105	33.74	d.74.1.1	111937
1erzA	303	33.98	d.160.1.2	59498
1n4wA	504	34.97	c.3.1.2,d.16.1.1	91676,91677
2fg1A	158	36.08	c.50.1.2	133400
1a8yA	367	37.26	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2q5wD	77	39.27		
3bevA	274	39.52		
2ra6A	166	41.34		
1vs1A	276	43.08		
1mq4A	272	43.91	d.144.1.7	91391
1r44A	202	47.66	d.65.1.4	104787
1a8y	367	55.34		
1gtdA	85	57.90	d.284.1.1	76344
2pspA	106	62.54	g.16.1.1,g.16.1.1	44730,44731
1r1qA	100	64.70	d.93.1.1	104763
1y4oA	104	64.98		
2av4A	162	65.47		
1bxkA	355	66.04	c.2.1.2	29803
2yrxA	451	67.28		
1et9A	204	70.01	b.40.2.2,d.15.6.1	25204,37793
1a9xA	1058	74.89	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503
1bj7A	156	76.39	b.60.1.1	27113
2ogtA	498	77.34		
2b95A	106	77.69		
1qnaA	200	79.19	d.129.1.1,d.129.1.1	41226,41227
1sfxA	109	79.40	a.4.5.50	105505
1a28A	256	82.21	a.123.1.1	19290
2ew0A	192	84.32	d.310.1.1	132445
1sjiA	350	87.43