# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.29e-09		
2ehbD	143	5.630		
2in3A	216	9.660		
1dcoA	104	12.74	d.74.1.1	39680
3bevA	274	17.54		
1kid	203	24.14		
1mogA	67	24.37	d.230.2.1	85034
1sf9A	128	24.62	b.34.15.1	98831
2yxyA	115	25.35		
1qgvA	142	26.48	c.47.1.8	33056
1o60A	292	27.16	c.1.10.4	92532
1n2zA	245	27.52	c.92.2.2	79865
1a6zA	275	29.60	b.1.1.2,d.19.1.1	20781,38280
1kidA	203	30.34	c.8.5.1	30771
2ccyA	128	30.59	a.24.3.2	16544
2bkyX	89	33.71	d.68.6.1	128717
1r7lA	110	34.62	d.277.1.1	104837
2e1bA	216	37.54		
1irsA	112	39.50	b.55.1.2	26991
1ru0A	105	40.02	d.74.1.1	111937
1wd6A	123	40.40	d.58.4.12	114525
2oocA	113	48.42		
2q7wA	396	50.62		
2dtcA	126	53.85		
2pspA	106	55.09	g.16.1.1,g.16.1.1	44730,44731
2cz8A	69	61.22		
2ifsA	169	61.57		
1b93A	152	61.66	c.24.1.2	31507
1usmA	80	65.81	d.74.1.1	99876
1vjqA	79	66.35	k.43.1.1	100830
1pjqA	457	67.22	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2fipA	115	67.83		
1h3lA	87	70.22	a.177.1.1	76639
2i9dA	217	70.95		
2q62A	247	75.67		
1mkeA	152	77.19	b.55.1.4	79231
2f7lA	455	77.55		
1gu2A	124	77.93	a.3.1.1	76348
1nlfA	279	78.47	c.37.1.11	85850
2afcA	168	84.50	c.50.1.2	126676
1gefA	123	85.29	c.52.1.18	60465
1w8gA	234	88.80		
1b4bA	71	89.43	d.74.2.1	39718