# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	8.80e-11		
2ehbD	143	0.5161		
1o60A	292	4.122	c.1.10.4	92532
1qgvA	142	7.775	c.47.1.8	33056
2cz8A	69	14.77		
1mogA	67	15.12	d.230.2.1	85034
1n4wA	504	18.42	c.3.1.2,d.16.1.1	91676,91677
1dcoA	104	20.25	d.74.1.1	39680
2oaaA	249	22.19		
2afcA	168	23.62	c.50.1.2	126676
2bkrA	212	24.86	d.3.1.7	128710
1j2rA	199	25.14	c.33.1.3	90788
3bevA	274	25.29		
2ux9A	69	28.69		
1pqnA	127	29.29	c.47.1.8	95025
2q5wD	77	31.01		
2i9dA	217	34.80		
1dpbA	243	35.31	c.43.1.1	32618
1r9wA	145	40.27	d.89.1.2	97264
1ru0A	105	40.84	d.74.1.1	111937
1erzA	303	47.10	d.160.1.2	59498
2cc6A	68	47.25	d.230.2.1	130218
2ra6A	166	47.69		
2ii3A	262	48.80		
2zfdB	123	49.10		
2in3A	216	50.85		
2nscA	109	51.85		
1bj7A	156	51.92	b.60.1.1	27113
1v7oA	165	54.84	d.67.1.2	100480
2dqaA	124	56.69		
1ekfA	365	56.87	e.17.1.1	59445
1gheA	177	57.07	d.108.1.1	76222
2a1hA	365	57.39	e.17.1.1	125997
1umhA	184	57.45	b.18.1.21	99605
1y4oA	104	57.46		
1mq4A	272	60.50	d.144.1.7	91391
1f08A	148	61.90	d.89.1.2	59564
1bupA	386	62.38	c.55.1.1,c.55.1.1	33377,33378
1b4bA	71	63.48	d.74.2.1	39718
1kay	381	68.97		
1sqwA	188	69.28	b.122.1.1,d.17.6.3	119033,119034
1vs1A	276	69.78		
1t17A	148	69.96	d.129.3.6	112215
1a9xA	1058	70.47	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503
2pspA	106	73.27	g.16.1.1,g.16.1.1	44730,44731
1v4pA	157	74.98	d.67.1.2	113533
1n71A	180	76.91	d.108.1.1	85370
1a3yA	149	82.72	b.60.1.1	27110
2b95A	106	82.79		
1sczA	233	88.22	c.43.1.1	98802