# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2jz5A 91 9.86e-12 2ehbD 143 0.3027 2dqaA 124 4.319 1o60A 292 4.939 c.1.10.4 92532 1jk7A 323 5.347 d.159.1.3 63144 1qgvA 142 5.548 c.47.1.8 33056 1wy2A 351 6.014 1dzlA 505 7.720 b.121.6.1 23586 1bxkA 355 11.23 c.2.1.2 29803 1dpbA 243 11.61 c.43.1.1 32618 1pqnA 127 13.41 c.47.1.8 95025 1mogA 67 14.11 d.230.2.1 85034 1yo8A 634 14.11 2cz8A 69 15.27 2afcA 168 15.27 c.50.1.2 126676 2bkrA 212 15.61 d.3.1.7 128710 2zfdB 123 16.52 2hq4A 161 17.06 3tmkA 216 18.05 c.37.1.1 31920 2izpA 303 20.20 a.250.1.1 137826 1zk5A 176 20.40 2c40A 312 21.88 2mev1 277 22.44 2h88B 252 25.38 2cc6A 68 25.65 d.230.2.1 130218 1t94A 459 25.89 d.240.1.1,e.8.1.7 106701,106702 1j2rA 199 26.02 c.33.1.3 90788 1sczA 233 26.26 c.43.1.1 98802 2nxvA 249 28.15 2vafA 378 29.35 2ux9A 69 29.67 1gewA 356 30.94 c.67.1.1 60470 2zceA 291 31.40 3bevA 274 31.48 1a0cA 438 31.62 c.1.15.3 29529 1eg9B 194 33.04 d.17.4.4 38120 3claA 213 33.47 c.43.1.1 32610 2isnA 364 35.09 2dc4A 165 36.66 2ys3A 137 37.46 3b4uA 294 38.63 2axtC 473 39.82 1ga8A 311 39.89 c.68.1.4 34516 2qezA 455 39.94 2qiyA 154 40.37 1xbsA 149 41.08 2in3A 216 41.57 2absA 383 42.38 c.72.1.1 126534 2av4A 162 43.04 1rydA 387 43.73 c.2.1.3,d.81.1.5 118801,118802 2pndA 119 47.45 3bkwA 243 47.93 2b4rO 345 48.47 c.2.1.3,d.81.1.1 127845,127846 1o7nB 194 48.80 d.17.4.4 81164 2p4pA 86 48.85 1pc4A 107 49.35 d.58.1.2 94428 2pi6A 361 50.13 1rfmA 344 50.60 c.122.1.1 97385 1dcoA 104 52.32 d.74.1.1 39680 1owqA 361 53.02 c.1.8.5,d.26.3.1 104041,104042 2b95A 106 53.25 1kit 757 53.82 1o9wA 177 54.08 b.2.3.5 86713 2qo3A 915 54.73 1hjxA 362 55.16 c.1.8.5,d.26.3.1 83512,83513 2pspA 106 56.12 g.16.1.1,g.16.1.1 44730,44731 1uwvA 433 57.05 b.40.4.12,c.66.1.40 100128,100129 3ladA 476 57.11 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1x88A 359 57.99 c.37.1.9 121797 1ru0A 105 59.89 d.74.1.1 111937 1u02A 239 60.12 c.108.1.15 107538 1nrjA 158 60.97 d.110.4.4 86124 1vpbA 451 61.20 d.283.1.1 113950 2b1xB 172 61.53 d.17.4.4 127677 1s31A 273 61.94 1o4yA 288 62.12 b.29.1.2 92473 2oixA 186 62.72 1kqfA 1015 63.75 b.52.2.2,c.81.1.1 72871,72872 2oaaA 249 63.98 2hpuA 175 64.19 1pb7A 292 64.35 c.94.1.1 88025 1kq6A 141 64.58 d.189.1.1 91020 1th0A 226 64.85 d.3.1.7 106903 3bsoA 510 65.05 1q74A 303 65.25 c.134.1.1 96019 1xx4A 261 65.49 c.14.1.3 116138 2f7lA 455 66.48 1anfA 370 69.14 c.94.1.1 35776 1wloA 136 69.20 2bo9A 308 70.24 c.56.5.1 128897 1u4gA 301 71.42 d.92.1.2 107670 1vetA 124 71.80 d.110.7.1 108553 2h8lA 252 72.66 1vs1A 276 72.68 1el5A 389 73.69 c.3.1.2,d.16.1.3 30369,37937 2ek6A 95 74.52 1bj7A 156 75.53 b.60.1.1 27113 2q43A 418 76.53 c.56.5.4,d.58.19.1 139821,139822 1mhmA 288 77.74 1vr6A 350 80.16 c.1.10.4 120439 1r1qA 100 80.46 d.93.1.1 104763 2dtcA 126 80.77 1e5pA 151 82.78 b.60.1.1 59272 2cmuA 342 83.25 2fg1A 158 84.77 c.50.1.2 133400 1rwyA 109 85.15 a.39.1.4 98002 1v1pA 211 85.88 b.40.2.2,d.15.6.1 108268,108269 2jg0A 535 86.49 1qysA 106 86.63 k.41.1.1 96603 2ra6A 166 87.61