# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.74e-11		
2ehbD	143	0.3402		
1o60A	292	3.760	c.1.10.4	92532
1qgvA	142	4.192	c.47.1.8	33056
1mogA	67	14.76	d.230.2.1	85034
2afcA	168	15.50	c.50.1.2	126676
2cz8A	69	18.64		
1pqnA	127	19.16	c.47.1.8	95025
2zfdB	123	22.38		
2q5wD	77	29.07		
1dcoA	104	30.34	d.74.1.1	39680
1j2rA	199	31.92	c.33.1.3	90788
2dqaA	124	34.09		
2ux9A	69	34.75		
1n4wA	504	35.99	c.3.1.2,d.16.1.1	91676,91677
1vs1A	276	38.44		
2bkrA	212	41.82	d.3.1.7	128710
2nscA	109	42.68		
2cc6A	68	42.93	d.230.2.1	130218
1a28A	256	43.63	a.123.1.1	19290
1xbsA	149	44.27		
1r44A	202	48.47	d.65.1.4	104787
1qnaA	200	49.73	d.129.1.1,d.129.1.1	41226,41227
2pspA	106	52.59	g.16.1.1,g.16.1.1	44730,44731
2in3A	216	53.58		
1dpbA	243	58.75	c.43.1.1	32618
1ru0A	105	59.70	d.74.1.1	111937
3bevA	274	60.80		
2ogtA	498	63.19		
1a9xA	1058	66.93	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503
1gheA	177	74.45	d.108.1.1	76222
2a1hA	365	74.64	e.17.1.1	125997
1erzA	303	74.67	d.160.1.2	59498
2b95A	106	78.97		
1b4bA	71	79.01	d.74.2.1	39718
2ii3A	262	82.50		
2i9dA	217	86.95		
1ekfA	365	88.82	e.17.1.1	59445
2q62A	247	89.58		
2yrxA	451	89.97