# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.59e-11		
2ehbD	143	0.6191		
1qgvA	142	3.821	c.47.1.8	33056
1pqnA	127	4.804	c.47.1.8	95025
1o60A	292	6.344	c.1.10.4	92532
1mogA	67	10.24	d.230.2.1	85034
2dqaA	124	14.36		
1dcoA	104	16.90	d.74.1.1	39680
2cz8A	69	17.06		
2cc6A	68	17.45	d.230.2.1	130218
2afcA	168	23.94	c.50.1.2	126676
2q5wD	77	28.19		
2bkrA	212	28.79	d.3.1.7	128710
2zfdB	123	31.09		
1r44A	202	32.45	d.65.1.4	104787
2pspA	106	34.02	g.16.1.1,g.16.1.1	44730,44731
2ux9A	69	34.75		
1n4wA	504	38.43	c.3.1.2,d.16.1.1	91676,91677
1vs1A	276	42.59		
1erzA	303	43.12	d.160.1.2	59498
2nscA	109	50.49		
3bevA	274	50.51		
1u5dA	108	53.63	b.55.1.1	119536
1wloA	136	56.58		
1ru0A	105	58.05	d.74.1.1	111937
1xbsA	149	58.84		
1j2rA	199	59.98	c.33.1.3	90788
2jmkA	111	67.44		
1bxkA	355	74.84	c.2.1.2	29803
1u58A	253	75.87		
2ogtA	498	81.13		
1a3yA	149	82.05	b.60.1.1	27110