# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	9.57e-12		
2ehbD	143	0.3668		
1qgvA	142	2.865	c.47.1.8	33056
1o60A	292	5.902	c.1.10.4	92532
1pqnA	127	9.104	c.47.1.8	95025
2cz8A	69	16.22		
1mogA	67	16.39	d.230.2.1	85034
2afcA	168	18.93	c.50.1.2	126676
2q5wD	77	25.24		
2cc6A	68	25.42	d.230.2.1	130218
2zfdB	123	26.26		
1erzA	303	26.38	d.160.1.2	59498
2nscA	109	27.89		
1dcoA	104	28.31	d.74.1.1	39680
2bkrA	212	31.33	d.3.1.7	128710
2ux9A	69	33.93		
3bevA	274	34.73		
2dqaA	124	35.71		
1n4wA	504	35.99	c.3.1.2,d.16.1.1	91676,91677
1r44A	202	37.37	d.65.1.4	104787
1vs1A	276	38.77		
2pspA	106	42.89	g.16.1.1,g.16.1.1	44730,44731
1u58A	253	43.74		
1xbsA	149	46.30		
1j2rA	199	47.45	c.33.1.3	90788
2in3A	216	49.62		
1u5dA	108	62.48	b.55.1.1	119536
1wloA	136	63.09		
1ofwA	296	66.04	a.138.1.1	92850
2bnjA	303	68.31	c.1.8.3	128832
1y4oA	104	68.59		
2ra6A	166	68.80		
2fg1A	158	69.21	c.50.1.2	133400
1ru0A	105	77.59	d.74.1.1	111937
1qnaA	200	78.20	d.129.1.1,d.129.1.1	41226,41227
2ogtA	498	78.37		
1bxkA	355	82.56	c.2.1.2	29803
2jmkA	111	89.17