# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.44e-09		
1mogA	67	5.730	d.230.2.1	85034
2cz8A	69	6.672		
2ehbD	143	9.361		
2ux9A	69	9.698		
2cc6A	68	9.703	d.230.2.1	130218
2rhsB	800	10.39		
2atrA	138	18.82	d.108.1.1	127305
2fp7B	172	24.51	b.47.1.3	133899
1qgvA	142	28.23	c.47.1.8	33056
2e1bA	216	28.89		
1dpbA	243	31.68	c.43.1.1	32618
2fomB	185	32.24	b.47.1.3	133884
3bevA	274	33.33		
1pqnA	127	34.61	c.47.1.8	95025
1pzsA	208	40.56	b.1.8.1	104397
1t6lA	290	40.88	d.131.1.2,d.131.1.2	106574,106575
2b95A	106	43.27		
1sczA	233	44.64	c.43.1.1	98802
1a6zA	275	47.62	b.1.1.2,d.19.1.1	20781,38280
1et9A	204	49.28	b.40.2.2,d.15.6.1	25204,37793
1i1dA	161	50.11	d.108.1.1	61526
2aleA	134	53.52		
1v4pA	157	53.99	d.67.1.2	113533
1li5A	461	62.37	a.27.1.1,c.26.1.1	73912,73913
2in3A	216	64.06		
1eaf	243	67.23		
1ulrA	88	70.20	d.58.10.1	113283
3claA	213	70.39	c.43.1.1	32610
1eonA	245	70.92	c.52.1.2	33238
1zlhB	75	71.09		
1v98A	140	72.77		
2r78A	117	73.78		
1fxrA	64	75.67	d.58.1.4	38993
1sj1A	66	78.64	d.58.1.4	105595
1dcoA	104	80.04	d.74.1.1	39680
2qgpA	112	81.84		
1uliB	187	84.26	d.17.4.4	107923
2nncA	124	85.29		
1rwhA	757	85.78	a.102.3.2,b.24.1.1,b.30.5.2	97984,97985,97986
1n2zA	245	89.31	c.92.2.2	79865