# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	2.55e-11		
3bevA	274	2.033		
1a6zA	275	3.204	b.1.1.2,d.19.1.1	20781,38280
1mogA	67	6.026	d.230.2.1	85034
2ehbD	143	10.30		
2cz8A	69	10.61		
1qgvA	142	11.09	c.47.1.8	33056
1qe3A	489	11.25	c.69.1.1	34630
2ux9A	69	15.54		
2cc6A	68	16.18	d.230.2.1	130218
2yxyA	115	24.82		
2bkrA	212	26.83	d.3.1.7	128710
2in3A	216	27.16		
2dtcA	126	33.93		
2e1bA	216	36.63		
1ru0A	105	39.02	d.74.1.1	111937
1uliB	187	42.09	d.17.4.4	107923
2fikA	287	44.57	b.1.1.2,d.19.1.1	133524,133525
1xjuA	163	50.00	d.2.1.3	115394
2ccyA	128	52.28	a.24.3.2	16544
2fozA	347	57.63		
1dcoA	104	58.20	d.74.1.1	39680
1pzsA	208	60.85	b.1.8.1	104397
2ii3A	262	60.91		
3claA	213	61.19	c.43.1.1	32610
1euvA	221	67.52	d.3.1.7	37133
2ekgA	327	68.98		
1a53A	247	74.36	c.1.2.4	28564
1kutA	230	75.57	d.143.1.1	73017
1f08A	148	77.09	d.89.1.2	59564
1r9wA	145	77.78	d.89.1.2	97264
2b1xB	172	77.92	d.17.4.4	127677
1dpbA	243	78.75	c.43.1.1	32618
1qnaA	200	85.36	d.129.1.1,d.129.1.1	41226,41227
2ra6A	166	87.74		
1t17A	148	87.81	d.129.3.6	112215