# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2jz5A 91 1.00e-06 2bkyX 89 4.960 d.68.6.1 128717 2aeuA 374 6.294 c.67.1.8 126646 1kr4A 125 6.835 d.58.5.2 72889 1wd6A 123 8.496 d.58.4.12 114525 1mp9A 198 8.945 d.129.1.1,d.129.1.1 91385,91386 1jmsA 381 9.022 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1n13B 113 9.252 1in0A 163 11.67 d.58.49.1,d.58.49.1 83694,83695 1ukuA 102 14.61 d.58.5.2 99533 1p1lA 102 18.69 d.58.5.2 87695 1vjqA 79 20.73 k.43.1.1 100830 2q7wA 396 21.12 1iv3A 152 21.94 d.79.5.1 76828 2hiqA 113 22.71 d.58.4.12 136529 2a4xA 138 22.86 d.32.1.2 126166 3cu3A 172 24.51 2v8hA 474 25.70 2id1A 130 26.60 2cveA 191 28.14 d.14.1.11,d.58.11.2 130869,130870 2cz8A 69 28.80 1ysrA 150 30.73 d.122.1.3 123981 1ysjA 404 31.19 c.56.5.4,d.58.19.1 123975,123976 1qnaA 200 32.13 d.129.1.1,d.129.1.1 41226,41227 1vloA 381 33.82 b.44.2.1,d.250.1.1 108838,108839 2ac3A 316 34.53 1j98A 157 36.90 d.185.1.2 62755 1gu2A 124 37.98 a.3.1.1 76348 2ormA 67 41.17 1nzaA 103 41.22 d.58.5.2 86444 1aisA 182 42.71 d.129.1.1,d.129.1.1 41288,41289 1nrkA 328 43.49 b.44.2.1,d.250.1.1 92089,92090 1sqwA 188 44.38 b.122.1.1,d.17.6.3 119033,119034 2rbbA 141 44.94 2h9uA 102 48.36 1ufwA 95 48.39 d.58.7.1 99358 2g2kA 170 51.46 1pytA 94 52.48 d.58.3.1 39064 2jdjA 105 52.91 2i8gA 151 53.34 1p71A 94 53.75 a.55.1.1 87840 2h6dA 276 54.46 1zr6A 503 56.50 1gx1A 160 57.12 d.79.5.1 70675 3ctaA 230 57.51 1wr2A 238 57.80 1k8kD 300 57.93 d.198.2.1,d.198.2.1 68309,68310 2nuhA 118 59.04 1iibA 106 61.88 c.44.2.1 32648 2nqtA 352 64.00 2yqzA 263 64.59 1r8hA 87 64.72 d.58.8.1 97233 1oscA 126 65.96 d.58.5.2 93490 2qmmA 197 65.98 1fnoA 417 66.78 d.58.19.1,c.56.5.4 70145,75841 2qm4A 235 67.57 2rhsA 294 68.04 1j6wA 175 69.07 d.185.1.2 62663 1h0xA 100 69.68 d.68.6.1 76451 2bopA 85 71.30 d.58.8.1 39217 1nxiA 132 72.21 d.58.47.1 86381 2f7lA 455 72.29 2iihA 157 73.22 2z1uA 343 73.79 2qwvA 208 74.29 2hzcA 87 76.35 1r9wA 145 76.72 d.89.1.2 97264 2a10A 125 78.61 d.58.56.1 125965 1mogA 67 78.86 d.230.2.1 85034 2dnrA 91 79.34 2ux9A 69 79.91 1dptA 117 80.14 d.80.1.3 39862 2arfA 165 81.15 1v8cA 168 82.24 d.15.3.1,d.129.5.1 100495,100496 2db1A 118 84.16 2g5fA 450 86.17 d.161.1.1 134654 2inpL 89 87.08 1mlaA 309 87.79 c.19.1.1,d.58.23.1 31031,39383 1jjiA 311 89.89 c.69.1.2 66766