# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 1.07e-58 2iagA 482 2.52e-58 3b6hA 498 4.92e-58 1tqnA 486 6.81e-58 a.104.1.1 107238 3c6gA 479 7.42e-58 1po5A 476 9.54e-58 a.104.1.1 94963 1zo4A 473 1.86e-57 2hi4A 495 2.05e-57 2ve3A 444 3.59e-57 1r9oA 477 7.70e-57 a.104.1.1 104878 2ij2A 470 7.75e-57 a.104.1.1 137449 1nr6A 473 1.32e-56 a.104.1.1 92085 1jpzA 473 1.87e-56 a.104.1.1 67069 1ea1A 455 1.91e-56 a.104.1.1 18970 1bu7A 455 2.36e-56 a.104.1.1 18937 1jmeA 455 3.72e-56 a.104.1.1 66885 3b98A 475 4.22e-56 1dt6A 473 5.62e-56 a.104.1.1 18977 1h5zA 455 1.02e-55 a.104.1.1 90622 1u13A 455 2.29e-55 a.104.1.1 107578 1x8vA 455 3.58e-55 a.104.1.1 114968 2cibA 455 1.66e-53 1izoA 417 5.35e-50 a.104.1.1 83851 1cptA 428 1.97e-49 a.104.1.1 18968 1cpt 412 9.58e-49 1qmqA 414 2.95e-48 a.104.1.1 18907 1dz4A 414 3.53e-48 a.104.1.1 18903 1phd 414 4.53e-48 2zbxA 412 1.10e-47 1cmnA 402 4.04e-47 a.104.1.1 18958 2d0eA 407 4.05e-47 1jipA 403 4.11e-47 a.104.1.1 66748 1jfbA 404 5.19e-47 a.104.1.1 66624 3bujA 397 7.18e-47 2d09A 407 7.50e-47 1rom 403 8.50e-47 1eupA 403 1.07e-46 a.104.1.1 18967 2z3tA 425 1.82e-46 1n97A 389 1.83e-46 a.104.1.1 80335 1f24A 402 1.94e-46 a.104.1.1 18953 1z8oA 404 2.57e-46 a.104.1.1 124722 1gwiA 411 7.01e-46 a.104.1.1 76364 1q5dA 419 1.51e-45 a.104.1.1 95891 1yrcA 414 1.50e-43 a.104.1.1 123917 1s1fA 406 1.90e-43 a.104.1.1 112008 1odoA 408 2.03e-43 a.104.1.1 92783 1lfkA 398 5.97e-43 a.104.1.1 77926 1n40A 396 8.01e-43 a.104.1.1 79977 3bdzA 397 9.32e-43 2uuqA 414 2.97e-42 2rfbA 343 4.76e-42 1t2bA 397 1.45e-41 1uedA 406 2.53e-41 a.104.1.1 99256 1io7A 368 4.57e-41 a.104.1.1 18971 1f4tA 368 4.78e-41 a.104.1.1 18973 2fr7A 412 7.33e-38 1a6i 217 2.181 3b81A 203 2.430 2scpA 174 2.833 a.39.1.5 17256 2of7A 260 4.043 2dg7A 195 6.925 3crjA 199 7.852 2zb9A 214 7.921 2c1lA 358 12.68 1vpwA 340 13.21 a.35.1.5,c.93.1.1 17087,35680 1pbgA 468 13.67 c.1.8.4 28946 2is6A 680 16.67 1qguB 519 16.80 c.92.2.3 35626 2p67A 341 17.86 2o7tA 199 18.33 1e8xA 961 19.40 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 2qtzA 539 19.68 2ggtA 164 20.47 c.47.1.10 135156 3craA 265 22.66 1e7uA 961 23.17 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2pbxA 203 25.11 1bs2A 607 25.39 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 1pjrA 724 27.71 c.37.1.19,c.37.1.19 32391,32392 1hqvA 191 28.17 a.39.1.8 61160 2hrzA 342 28.80 1qpzA 340 29.01 a.35.1.5,c.93.1.1 17097,35673 2hyxA 352 29.55 1f20A 435 29.63 b.43.4.1,c.25.1.4 64932,64933 2rasA 212 31.86 1z7bA 358 32.28 c.2.1.2 124599 1jyeA 349 32.66 c.93.1.1 67455 1zcbA 362 32.80 a.66.1.1,c.37.1.8 124901,124902 1pfvA 551 35.17 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1pscA 365 35.46 c.1.9.3 29058 3ccyA 203 36.10 1ni4A 365 38.03 c.36.1.11 85728 1t15A 214 38.23 c.15.1.3,c.15.1.3 99067,99068 2parA 201 38.67 2iekA 200 39.85 1rktA 205 40.33 a.4.1.9,a.121.1.1 97623,97624 2raeA 207 42.03 2fgeA 995 42.66 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 2bo9A 308 44.43 c.56.5.1 128897 1w2xA 758 46.13 c.14.1.4,c.14.1.4 109134,109135 1ev0A 58 46.58 d.71.1.1 39594 2hytA 197 46.63 2yy7A 312 47.08 1bf6A 291 47.42 c.1.9.3 29065 1oneA 436 47.44 c.1.11.1,d.54.1.1 29200,38844 1i58A 189 48.71 d.122.1.3 61773 1gm7A 209 50.23 d.153.1.2 65302 2pzmA 330 51.83 1i0dA 332 52.34 c.1.9.3 61487 1eywA 331 56.40 c.1.9.3 29057 2fq4A 192 56.68 a.4.1.9,a.121.1.1 133937,133938 2vprA 207 57.70 1el4A 195 58.01 a.39.1.5 59453 2e3bA 344 59.62 a.93.1.1 132024 1i5nA 146 61.19 a.24.10.3 61805 2i10A 202 61.50 a.4.1.9,a.121.1.1 136960,136961 1zkgA 212 62.13 a.4.1.9,a.121.1.1 125194,125195 2fymA 431 62.47 c.1.11.1,d.54.1.1 134379,134380 2sasA 185 63.31 a.39.1.5 17258 2qjvA 270 63.60 1rpnA 335 64.95 c.2.1.2 97708 2yy8A 201 67.39 1jt6A 188 68.04 a.4.1.9,a.121.1.1 67247,67248 2rauA 354 68.71 2p36A 335 69.35 2p4hX 322 71.51 3cjsB 72 71.91 2b69A 343 72.66 c.2.1.2 127974 2glcA 342 73.41 1ek8A 185 74.15 d.67.3.1 59444 3cdlA 203 75.26 1p9bA 442 75.40 c.37.1.10 94385 1ja1A 622 75.48 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2iw0A 254 78.80 c.6.2.3 137737 1iseA 185 79.05 d.67.3.1 90691 1gsaA 316 79.88 c.30.1.3,d.142.1.1 31718,41477 1njgA 250 80.35 c.37.1.20 85785 1omrA 201 81.49 a.39.1.5 93349 1kyzA 365 81.80 a.4.5.29,c.66.1.12 73312,73313 1jf0A 195 82.63 a.39.1.5 62926 1s0aA 429 82.75 c.67.1.4 98263 1fp3A 402 83.28 a.102.1.3 18842 1b16A 254 83.64 c.2.1.2 29875 1t33A 224 84.83 a.4.1.9,a.121.1.1 106295,106296 2sas 185 85.56 1zzoA 136 87.09 c.47.1.10 125913 1o4tA 133 87.52 b.82.1.9 86622 1u9jA 358 87.74 c.2.1.2 113243 1olmA 403 88.03 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010