# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 1.94e-57 2iagA 482 5.12e-57 3b6hA 498 8.15e-57 3c6gA 479 1.45e-56 1tqnA 486 1.87e-56 a.104.1.1 107238 1po5A 476 2.04e-56 a.104.1.1 94963 2hi4A 495 2.80e-56 1zo4A 473 4.32e-56 2ij2A 470 1.18e-55 a.104.1.1 137449 1r9oA 477 1.38e-55 a.104.1.1 104878 2ve3A 444 1.43e-55 1nr6A 473 1.75e-55 a.104.1.1 92085 1dt6A 473 2.22e-55 a.104.1.1 18977 1jpzA 473 3.11e-55 a.104.1.1 67069 1bu7A 455 3.55e-55 a.104.1.1 18937 1ea1A 455 3.94e-55 a.104.1.1 18970 1jmeA 455 6.57e-55 a.104.1.1 66885 3b98A 475 1.88e-54 1h5zA 455 1.96e-54 a.104.1.1 90622 1u13A 455 4.25e-54 a.104.1.1 107578 1x8vA 455 6.81e-54 a.104.1.1 114968 2cibA 455 1.32e-52 1izoA 417 2.59e-49 a.104.1.1 83851 1cptA 428 2.49e-48 a.104.1.1 18968 1cpt 412 6.74e-48 1qmqA 414 3.34e-47 a.104.1.1 18907 1dz4A 414 3.87e-47 a.104.1.1 18903 1phd 414 4.24e-47 2zbxA 412 8.98e-47 1cmnA 402 4.17e-46 a.104.1.1 18958 1jipA 403 4.45e-46 a.104.1.1 66748 1jfbA 404 5.63e-46 a.104.1.1 66624 2d0eA 407 7.89e-46 3bujA 397 9.22e-46 1eupA 403 1.25e-45 a.104.1.1 18967 1rom 403 1.28e-45 2d09A 407 1.39e-45 1f24A 402 1.48e-45 a.104.1.1 18953 1n97A 389 1.69e-45 a.104.1.1 80335 2z3tA 425 1.84e-45 1z8oA 404 3.10e-45 a.104.1.1 124722 1gwiA 411 1.11e-44 a.104.1.1 76364 1q5dA 419 3.11e-44 a.104.1.1 95891 1yrcA 414 8.36e-43 a.104.1.1 123917 1odoA 408 1.68e-42 a.104.1.1 92783 1s1fA 406 2.03e-42 a.104.1.1 112008 3bdzA 397 3.65e-42 1lfkA 398 7.24e-42 a.104.1.1 77926 1n40A 396 8.88e-42 a.104.1.1 79977 2uuqA 414 1.60e-41 2rfbA 343 2.87e-41 1uedA 406 1.16e-40 a.104.1.1 99256 1t2bA 397 1.45e-40 1io7A 368 1.89e-40 a.104.1.1 18971 1f4tA 368 2.06e-40 a.104.1.1 18973 2fr7A 412 5.44e-37 3b81A 203 2.494 1a6i 217 2.629 2scpA 174 2.805 a.39.1.5 17256 2of7A 260 3.477 2zb9A 214 5.956 2dg7A 195 6.846 3crjA 199 8.138 2pbxA 203 11.12 3craA 265 11.57 1pjrA 724 13.81 c.37.1.19,c.37.1.19 32391,32392 2parA 201 16.50 1vpwA 340 17.19 a.35.1.5,c.93.1.1 17087,35680 1hqvA 191 18.60 a.39.1.8 61160 2iekA 200 19.72 2c1lA 358 20.50 1f20A 435 20.67 b.43.4.1,c.25.1.4 64932,64933 2is6A 680 21.77 1gm7A 209 22.42 d.153.1.2 65302 1zcbA 362 22.43 a.66.1.1,c.37.1.8 124901,124902 1jf0A 195 23.85 a.39.1.5 62926 1jyeA 349 25.70 c.93.1.1 67455 2ggtA 164 26.80 c.47.1.10 135156 2o7tA 199 26.91 2i10A 202 29.68 a.4.1.9,a.121.1.1 136960,136961 1pscA 365 30.37 c.1.9.3 29058 1el4A 195 31.28 a.39.1.5 59453 1qguB 519 32.65 c.92.2.3 35626 2ikqA 270 36.51 2hyxA 352 37.35 1pbgA 468 37.44 c.1.8.4 28946 1ni4A 365 37.95 c.36.1.11 85728 1eywA 331 39.57 c.1.9.3 29057 1t33A 224 39.85 a.4.1.9,a.121.1.1 106295,106296 1i0dA 332 40.34 c.1.9.3 61487 1ev0A 58 41.32 d.71.1.1 39594 1zcaA 359 41.73 a.66.1.1,c.37.1.8 124897,124898 2qtzA 539 42.99 1omrA 201 45.58 a.39.1.5 93349 2p36A 335 45.95 2raeA 207 46.08 2fq4A 192 46.21 a.4.1.9,a.121.1.1 133937,133938 2e3bA 344 48.54 a.93.1.1 132024 1rpnA 335 49.85 c.2.1.2 97708 1jf2A 195 50.16 a.39.1.5 62930 1i58A 189 50.59 d.122.1.3 61773 2bo9A 308 50.79 c.56.5.1 128897 1kczA 413 52.39 c.1.11.2,d.54.1.1 68451,68452 2ccmA 191 52.90 1bf6A 291 54.22 c.1.9.3 29065 2hrzA 342 54.52 2glcA 342 56.98 1zkgA 212 57.24 a.4.1.9,a.121.1.1 125194,125195 1dpeA 507 57.30 c.94.1.1 35799 2z1mA 345 57.44 1uaaA 673 61.68 c.37.1.19,c.37.1.19 32401,32402 2rauA 354 62.49 1bs2A 607 62.94 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 2qjvA 270 63.56 2pzmA 330 63.76 2fncA 381 64.03 1qksA 567 64.77 a.3.1.2,b.70.2.1 15951,27710 1qpzA 340 66.03 a.35.1.5,c.93.1.1 17097,35673 1b3qA 379 67.87 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 1e7uA 961 68.36 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2rasA 212 68.50 1svsA 353 68.85 c.37.1.8 106051 1rktA 205 69.19 a.4.1.9,a.121.1.1 97623,97624 3cjsB 72 70.45 1oneA 436 70.99 c.1.11.1,d.54.1.1 29200,38844 1gsaA 316 71.63 c.30.1.3,d.142.1.1 31718,41477 1whxA 111 71.89 d.58.7.1 114654 1jt6A 188 72.45 a.4.1.9,a.121.1.1 67247,67248 1iseA 185 72.70 d.67.3.1 90691 3ccyA 203 72.77 2yy7A 312 74.61 1o4tA 133 76.71 b.82.1.9 86622 1xk4C 113 77.02 a.39.1.2 122057 3bg1B 442 79.80 2vprA 207 79.91 2adbA 148 80.19 d.58.7.1 126581 2adcA 229 80.56 d.58.7.1,d.58.7.1 126582,126583 1uehA 253 82.18 c.101.1.1 99259 2ovkC 159 82.32 1oc2A 348 82.84 c.2.1.2 92765 1z7bA 358 84.78 c.2.1.2 124599 1sjyA 159 84.95 d.113.1.1 98900 1t56A 216 85.22 a.4.1.9,a.121.1.1 106428,106429 2hpaA 342 85.38 c.60.1.2 33985 2h0qA 261 85.70 2id6A 202 87.49 1njgA 250 87.91 c.37.1.20 85785 1w6kA 732 88.00 a.102.4.2,a.102.4.2 114271,114272 2hytA 197 88.27 1t15A 214 88.27 c.15.1.3,c.15.1.3 99067,99068 1r5lA 262 89.89 a.5.3.1,c.13.1.1 97099,97100