# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 1.61e-63 2iagA 482 1.89e-63 3b6hA 498 2.96e-63 3c6gA 479 7.34e-63 1zo4A 473 1.32e-62 1po5A 476 1.69e-62 a.104.1.1 94963 2hi4A 495 2.41e-62 2ve3A 444 2.85e-62 2ij2A 470 4.02e-62 a.104.1.1 137449 1tqnA 486 5.80e-62 a.104.1.1 107238 1nr6A 473 5.88e-62 a.104.1.1 92085 1bu7A 455 1.06e-61 a.104.1.1 18937 1jmeA 455 1.13e-61 a.104.1.1 66885 1r9oA 477 2.26e-61 a.104.1.1 104878 1jpzA 473 2.74e-61 a.104.1.1 67069 1dt6A 473 3.06e-61 a.104.1.1 18977 3b98A 475 9.91e-61 1ea1A 455 1.23e-60 a.104.1.1 18970 1h5zA 455 1.37e-59 a.104.1.1 90622 1u13A 455 1.88e-59 a.104.1.1 107578 1x8vA 455 3.10e-59 a.104.1.1 114968 2cibA 455 1.17e-57 1izoA 417 4.81e-54 a.104.1.1 83851 1cptA 428 7.58e-54 a.104.1.1 18968 1cpt 412 6.23e-53 1qmqA 414 2.85e-52 a.104.1.1 18907 1dz4A 414 4.20e-52 a.104.1.1 18903 1phd 414 4.48e-52 2zbxA 412 2.06e-51 1cmnA 402 5.41e-51 a.104.1.1 18958 1jipA 403 7.24e-51 a.104.1.1 66748 1jfbA 404 9.29e-51 a.104.1.1 66624 1n97A 389 1.01e-50 a.104.1.1 80335 1rom 403 1.26e-50 2z3tA 425 1.39e-50 3bujA 397 1.74e-50 1eupA 403 2.03e-50 a.104.1.1 18967 2d0eA 407 2.35e-50 1f24A 402 3.27e-50 a.104.1.1 18953 1gwiA 411 4.90e-50 a.104.1.1 76364 2d09A 407 5.52e-50 1z8oA 404 6.34e-50 a.104.1.1 124722 1q5dA 419 5.14e-49 a.104.1.1 95891 1yrcA 414 1.13e-47 a.104.1.1 123917 1odoA 408 2.34e-47 a.104.1.1 92783 1s1fA 406 1.00e-46 a.104.1.1 112008 3bdzA 397 1.40e-46 1lfkA 398 1.71e-46 a.104.1.1 77926 2uuqA 414 6.10e-46 1n40A 396 6.43e-46 a.104.1.1 79977 2rfbA 343 1.16e-45 1t2bA 397 8.43e-45 1uedA 406 1.07e-44 a.104.1.1 99256 1io7A 368 1.67e-44 a.104.1.1 18971 1f4tA 368 1.77e-44 a.104.1.1 18973 2fr7A 412 5.08e-41 2of7A 260 1.214 1pjrA 724 4.119 c.37.1.19,c.37.1.19 32391,32392 2scpA 174 4.120 a.39.1.5 17256 1a6i 217 4.899 2is6A 680 5.579 3b81A 203 5.813 1pscA 365 7.648 c.1.9.3 29058 1jf0A 195 10.11 a.39.1.5 62926 2parA 201 10.23 2dg7A 195 10.91 1i0dA 332 13.42 c.1.9.3 61487 1zcbA 362 13.61 a.66.1.1,c.37.1.8 124901,124902 2c1lA 358 13.72 1bs2A 607 14.58 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 1eywA 331 15.06 c.1.9.3 29057 1oneA 436 15.41 c.1.11.1,d.54.1.1 29200,38844 1a0cA 438 16.19 c.1.15.3 29529 1dpeA 507 17.11 c.94.1.1 35799 2pbxA 203 18.61 1i58A 189 18.71 d.122.1.3 61773 1omrA 201 19.22 a.39.1.5 93349 2i10A 202 19.72 a.4.1.9,a.121.1.1 136960,136961 1f20A 435 20.34 b.43.4.1,c.25.1.4 64932,64933 2zb9A 214 20.58 1bf6A 291 20.97 c.1.9.3 29065 2fymA 431 22.45 c.1.11.1,d.54.1.1 134379,134380 1hqvA 191 23.05 a.39.1.8 61160 1gsaA 316 26.37 c.30.1.3,d.142.1.1 31718,41477 2e3bA 344 29.08 a.93.1.1 132024 2raeA 207 29.40 1ekeA 230 29.52 c.55.3.1 33572 1w7jB 151 30.70 a.39.1.5 120690 3crjA 199 31.74 2bo9A 308 32.07 c.56.5.1 128897 1zcaA 359 33.20 a.66.1.1,c.37.1.8 124897,124898 3craA 265 34.08 1i5nA 146 34.58 a.24.10.3 61805 1jf2A 195 36.44 a.39.1.5 62930 1uaaA 673 36.68 c.37.1.19,c.37.1.19 32401,32402 4enl 436 36.98 2ccmA 191 37.00 1ha1 184 37.09 1vpwA 340 43.09 a.35.1.5,c.93.1.1 17087,35680 1floA 422 44.34 a.60.9.1,d.163.1.1 18106,42166 3bq3A 270 44.41 1pbgA 468 45.87 c.1.8.4 28946 1ta9A 450 46.06 2qtzA 539 46.34 1svsA 353 47.09 c.37.1.8 106051 2javA 279 47.59 d.144.1.7 138243 2f2hA 773 47.76 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1qo7A 394 48.73 c.69.1.11 34697 1hl9A 449 49.77 b.71.1.3,c.1.8.11 90650,90651 1qguB 519 49.85 c.92.2.3 35626 1w9yA 319 50.20 b.82.2.1 120801 1jbaA 204 52.51 a.39.1.5 17330 2al1A 436 53.18 c.1.11.1,d.54.1.1 126949,126950 3cjsB 72 53.38 2iekA 200 54.59 1ev0A 58 54.69 d.71.1.1 39594 1ni4A 365 55.12 c.36.1.11 85728 1el4A 195 55.22 a.39.1.5 59453 1dd5A 185 55.39 d.67.3.1 39564 2hpsA 186 57.07 2z1mA 345 58.17 2ew2A 316 58.25 2ovkC 159 58.32 1x8bA 289 58.97 2ggtA 164 59.25 c.47.1.10 135156 1hjdA 101 59.29 b.34.2.1 65846 2ptzA 432 59.62 1iseA 185 62.28 d.67.3.1 90691 2gc7D 147 63.10 a.3.1.1 134957 1l3kA 196 64.09 d.58.7.1,d.58.7.1 73539,73540 1urnA 97 64.65 d.58.7.1 39153 3bneA 839 65.29 2al2A 436 68.65 c.1.11.1,d.54.1.1 126953,126954 1ek8A 185 69.19 d.67.3.1 59444 2g29A 417 70.41 1a0eA 443 70.57 c.1.15.3 29537 1u6bA 98 71.10 d.58.7.1 107703 2fncA 381 72.51 2pa6A 427 72.95 1qrjB 199 73.25 a.28.3.1 16952 1p9bA 442 73.36 c.37.1.10 94385 1e8xA 961 73.46 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 1whxA 111 74.06 d.58.7.1 114654 2sasA 185 74.07 a.39.1.5 17258 1z5rA 306 74.91 c.56.5.1 124488 2di4A 238 76.43 a.269.1.1 131522 2rasA 212 76.89 2hyxA 352 77.16 2ozlA 365 77.52 1o4tA 133 77.67 b.82.1.9 86622 1ni5A 433 77.82 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2jesA 503 78.76 1alvA 173 78.86 a.39.1.8 17370 1a2xA 159 78.94 a.39.1.5 17251 1b3qA 379 80.63 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 1oc2A 348 81.44 c.2.1.2 92765 1f07A 321 81.67 c.1.16.3 59560 1pfvA 551 82.36 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2gv5A 161 82.46 1d2rB 326 83.85 c.26.1.1 31573 4mbp 370 84.13 1zkgA 212 84.86 a.4.1.9,a.121.1.1 125194,125195 1qwgA 251 86.24 c.1.27.1 96473 3cjdA 198 86.73 2d2jA 329 87.63 c.1.9.3 131175