# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 3.27e-52 2iagA 482 3.61e-52 3b6hA 498 5.55e-52 1tqnA 486 1.52e-51 a.104.1.1 107238 1po5A 476 1.95e-51 a.104.1.1 94963 3c6gA 479 2.38e-51 1zo4A 473 3.90e-51 2hi4A 495 4.44e-51 2ve3A 444 6.37e-51 2ij2A 470 9.50e-51 a.104.1.1 137449 1r9oA 477 1.11e-50 a.104.1.1 104878 1jmeA 455 2.18e-50 a.104.1.1 66885 1bu7A 455 2.32e-50 a.104.1.1 18937 1nr6A 473 2.92e-50 a.104.1.1 92085 1ea1A 455 3.08e-50 a.104.1.1 18970 1jpzA 473 3.20e-50 a.104.1.1 67069 3b98A 475 3.65e-50 1dt6A 473 9.30e-50 a.104.1.1 18977 1h5zA 455 1.83e-49 a.104.1.1 90622 1u13A 455 2.91e-49 a.104.1.1 107578 1x8vA 455 5.45e-49 a.104.1.1 114968 2cibA 455 8.71e-48 1izoA 417 1.74e-44 a.104.1.1 83851 1cptA 428 4.60e-44 a.104.1.1 18968 1cpt 412 1.96e-43 1qmqA 414 2.45e-43 a.104.1.1 18907 1phd 414 5.83e-43 1dz4A 414 5.88e-43 a.104.1.1 18903 2zbxA 412 9.87e-43 2d0eA 407 3.07e-42 1cmnA 402 4.89e-42 a.104.1.1 18958 2d09A 407 5.54e-42 3bujA 397 7.06e-42 1jipA 403 7.72e-42 a.104.1.1 66748 2z3tA 425 9.03e-42 1jfbA 404 1.08e-41 a.104.1.1 66624 1eupA 403 1.27e-41 a.104.1.1 18967 1rom 403 1.38e-41 1n97A 389 2.29e-41 a.104.1.1 80335 1f24A 402 3.65e-41 a.104.1.1 18953 1z8oA 404 4.91e-41 a.104.1.1 124722 1gwiA 411 1.27e-40 a.104.1.1 76364 1q5dA 419 2.50e-40 a.104.1.1 95891 1yrcA 414 5.96e-39 a.104.1.1 123917 1odoA 408 1.33e-38 a.104.1.1 92783 3bdzA 397 1.41e-38 1s1fA 406 1.76e-38 a.104.1.1 112008 1lfkA 398 2.51e-38 a.104.1.1 77926 1n40A 396 4.00e-38 a.104.1.1 79977 2uuqA 414 4.31e-38 2rfbA 343 4.32e-38 1uedA 406 1.06e-37 a.104.1.1 99256 1t2bA 397 3.96e-37 1f4tA 368 8.43e-37 a.104.1.1 18973 1io7A 368 1.01e-36 a.104.1.1 18971 2fr7A 412 1.82e-33 3b81A 203 2.020 1a6i 217 3.622 3crjA 199 3.975 2zb9A 214 4.343 2of7A 260 4.506 2pbxA 203 6.992 1rktA 205 7.010 a.4.1.9,a.121.1.1 97623,97624 1vpwA 340 7.695 a.35.1.5,c.93.1.1 17087,35680 2dg7A 195 7.753 2scpA 174 7.799 a.39.1.5 17256 1qguB 519 8.528 c.92.2.3 35626 2hytA 197 9.99 2c1lA 358 11.19 1bs2A 607 11.44 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 2is6A 680 12.05 2i10A 202 12.09 a.4.1.9,a.121.1.1 136960,136961 2fq4A 192 13.38 a.4.1.9,a.121.1.1 133937,133938 1e8xA 961 15.28 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 1jyeA 349 16.18 c.93.1.1 67455 1f20A 435 16.19 b.43.4.1,c.25.1.4 64932,64933 3ccyA 203 17.19 2raeA 207 17.55 1t33A 224 19.19 a.4.1.9,a.121.1.1 106295,106296 2rasA 212 20.72 1ni4A 365 21.31 c.36.1.11 85728 2bo9A 308 21.50 c.56.5.1 128897 1qpzA 340 22.12 a.35.1.5,c.93.1.1 17097,35673 2rebA 352 22.25 c.37.1.11,d.48.1.1 32282,38767 1e7uA 961 23.64 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1t56A 216 24.05 a.4.1.9,a.121.1.1 106428,106429 2bs3A 656 25.74 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1z5rA 306 27.13 c.56.5.1 124488 2np5A 203 27.56 a.4.1.9,a.121.1.1 138424,138425 2parA 201 28.82 1jt6A 188 29.66 a.4.1.9,a.121.1.1 67247,67248 3craA 265 31.56 1pbgA 468 32.00 c.1.8.4 28946 2o7tA 199 33.47 2pzmA 330 39.67 1w6kA 732 40.17 a.102.4.2,a.102.4.2 114271,114272 2z1mA 345 41.66 1s0aA 429 41.77 c.67.1.4 98263 3cdlA 203 42.31 1rpnA 335 44.62 c.2.1.2 97708 1hqvA 191 45.29 a.39.1.8 61160 2id3A 225 45.58 a.4.1.9,a.121.1.1 137261,137262 1oneA 436 45.64 c.1.11.1,d.54.1.1 29200,38844 2ggtA 164 45.70 c.47.1.10 135156 2iekA 200 46.99 2q4uA 272 47.38 1fp3A 402 47.51 a.102.1.3 18842 2qtzA 539 47.60 2hyxA 352 48.35 1ev0A 58 48.98 d.71.1.1 39594 3bcgA 215 51.75 1bavA 309 51.91 c.56.5.1 33806 1kyzA 365 55.04 a.4.5.29,c.66.1.12 73312,73313 2iw0A 254 55.50 c.6.2.3 137737 1gsaA 316 56.64 c.30.1.3,d.142.1.1 31718,41477 2hrzA 342 56.67 1dd9A 338 59.66 e.13.1.1 43254 1m4lA 307 60.47 c.56.5.1 78604 1qrjB 199 60.60 a.28.3.1 16952 1bf6A 291 62.66 c.1.9.3 29065 1b16A 254 63.85 c.2.1.2 29875 2e3bA 344 64.16 a.93.1.1 132024 1h8eA 510 64.87 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1el4A 195 66.08 a.39.1.5 59453 1alvA 173 66.16 a.39.1.8 17370 1z7bA 358 66.27 c.2.1.2 124599 1zkgA 212 66.58 a.4.1.9,a.121.1.1 125194,125195 3cjsB 72 67.23 2ctc 307 69.90 1dbqA 289 69.97 c.93.1.1 35666 2di4A 238 72.62 a.269.1.1 131522 1omrA 201 74.53 a.39.1.5 93349 3bruA 222 77.99 1xk4C 113 78.29 a.39.1.2 122057 2fymA 431 78.73 c.1.11.1,d.54.1.1 134379,134380 1dhs 344 79.25 1dtdA 303 84.27 c.56.5.1 33823 1umpA 631 84.92 a.102.4.2,a.102.4.2 99619,99620 2rauA 354 85.90 2o7oA 207 86.41 a.4.1.9,a.121.1.1 138930,138931 2fncA 381 87.03 2ew2A 316 88.48 1p9bA 442 88.68 c.37.1.10 94385 2qibA 231 89.08 2p4hX 322 89.72