# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 5.11e-62 2iagA 482 9.78e-62 3b6hA 498 1.57e-61 3c6gA 479 3.49e-61 1po5A 476 3.63e-61 a.104.1.1 94963 1tqnA 486 6.40e-61 a.104.1.1 107238 1zo4A 473 1.18e-60 2hi4A 495 1.47e-60 1nr6A 473 2.10e-60 a.104.1.1 92085 2ve3A 444 4.47e-60 2ij2A 470 6.03e-60 a.104.1.1 137449 1r9oA 477 7.57e-60 a.104.1.1 104878 1bu7A 455 7.81e-60 a.104.1.1 18937 1jmeA 455 1.03e-59 a.104.1.1 66885 1jpzA 473 1.18e-59 a.104.1.1 67069 1ea1A 455 2.13e-59 a.104.1.1 18970 3b98A 475 2.73e-59 1dt6A 473 5.47e-59 a.104.1.1 18977 1h5zA 455 2.17e-58 a.104.1.1 90622 1u13A 455 3.75e-58 a.104.1.1 107578 1x8vA 455 5.17e-58 a.104.1.1 114968 2cibA 455 4.26e-56 1izoA 417 3.45e-52 a.104.1.1 83851 1cptA 428 7.60e-52 a.104.1.1 18968 1cpt 412 3.92e-51 1qmqA 414 7.62e-51 a.104.1.1 18907 1dz4A 414 1.75e-50 a.104.1.1 18903 1phd 414 2.77e-50 2zbxA 412 3.04e-50 1jipA 403 1.48e-49 a.104.1.1 66748 3bujA 397 1.52e-49 1cmnA 402 1.54e-49 a.104.1.1 18958 2d0eA 407 2.13e-49 1rom 403 2.42e-49 2d09A 407 3.54e-49 1n97A 389 3.75e-49 a.104.1.1 80335 1eupA 403 3.97e-49 a.104.1.1 18967 1jfbA 404 4.04e-49 a.104.1.1 66624 2z3tA 425 5.31e-49 1z8oA 404 9.23e-49 a.104.1.1 124722 1f24A 402 1.46e-48 a.104.1.1 18953 1gwiA 411 5.94e-48 a.104.1.1 76364 1q5dA 419 9.47e-48 a.104.1.1 95891 1odoA 408 4.19e-46 a.104.1.1 92783 1yrcA 414 1.49e-45 a.104.1.1 123917 1s1fA 406 1.52e-45 a.104.1.1 112008 3bdzA 397 2.65e-45 1lfkA 398 3.96e-45 a.104.1.1 77926 1n40A 396 1.14e-44 a.104.1.1 79977 2uuqA 414 1.54e-44 2rfbA 343 2.71e-44 1t2bA 397 6.03e-44 1uedA 406 1.18e-43 a.104.1.1 99256 1io7A 368 7.01e-43 a.104.1.1 18971 1f4tA 368 8.70e-43 a.104.1.1 18973 2fr7A 412 2.71e-39 1a6i 217 1.352 2scpA 174 2.232 a.39.1.5 17256 2of7A 260 5.255 2is6A 680 6.153 3b81A 203 10.05 2dg7A 195 10.15 2zb9A 214 10.86 2c1lA 358 11.25 1zcbA 362 16.66 a.66.1.1,c.37.1.8 124901,124902 1jf0A 195 16.95 a.39.1.5 62926 1jyeA 349 17.01 c.93.1.1 67455 3craA 265 17.75 1pbgA 468 18.98 c.1.8.4 28946 1pscA 365 19.12 c.1.9.3 29058 2ggtA 164 20.20 c.47.1.10 135156 1hqvA 191 20.99 a.39.1.8 61160 3crjA 199 21.39 1i0dA 332 22.60 c.1.9.3 61487 1f20A 435 23.17 b.43.4.1,c.25.1.4 64932,64933 1w6kA 732 24.11 a.102.4.2,a.102.4.2 114271,114272 2i10A 202 24.73 a.4.1.9,a.121.1.1 136960,136961 2parA 201 25.62 2bo9A 308 27.28 c.56.5.1 128897 1eywA 331 28.15 c.1.9.3 29057 1gsaA 316 31.51 c.30.1.3,d.142.1.1 31718,41477 2hyxA 352 32.27 2yy8A 201 32.28 1pjrA 724 32.67 c.37.1.19,c.37.1.19 32391,32392 1qguB 519 32.81 c.92.2.3 35626 2qtzA 539 33.41 1e8xA 961 34.51 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 1pfvA 551 35.87 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2rasA 212 38.36 1bf6A 291 41.70 c.1.9.3 29065 1z5rA 306 42.73 c.56.5.1 124488 1bs2A 607 43.29 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 2iekA 200 44.53 1kyzA 365 46.40 a.4.5.29,c.66.1.12 73312,73313 3cjsB 72 46.70 1w2xA 758 48.88 c.14.1.4,c.14.1.4 109134,109135 1t15A 214 50.02 c.15.1.3,c.15.1.3 99067,99068 2fq4A 192 50.19 a.4.1.9,a.121.1.1 133937,133938 1omrA 201 51.83 a.39.1.5 93349 1oneA 436 52.16 c.1.11.1,d.54.1.1 29200,38844 1e7uA 961 55.21 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2fymA 431 56.38 c.1.11.1,d.54.1.1 134379,134380 1i58A 189 56.90 d.122.1.3 61773 1i5nA 146 60.11 a.24.10.3 61805 1kczA 413 60.11 c.1.11.2,d.54.1.1 68451,68452 1ha1 184 63.40 1ni4A 365 63.52 c.36.1.11 85728 2pbxA 203 66.24 1b16A 254 71.02 c.2.1.2 29875 1iseA 185 71.28 d.67.3.1 90691 3bq3A 270 71.64 2e3bA 344 73.30 a.93.1.1 132024 1sjyA 159 73.80 d.113.1.1 98900 1ev0A 58 76.73 d.71.1.1 39594 2adbA 148 77.79 d.58.7.1 126581 3cdlA 203 78.08 2iw0A 254 78.38 c.6.2.3 137737 1qwgA 251 80.52 c.1.27.1 96473 1h5qA 265 80.54 c.2.1.2 60643 1dhs 344 80.54 2rebA 352 82.91 c.37.1.11,d.48.1.1 32282,38767 1q08A 99 83.10 a.6.1.3 95497 2raeA 207 84.70 2bs3A 656 85.00 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 3c5mA 396 85.97 1p9bA 442 87.43 c.37.1.10 94385 2ccmA 191 87.82 2f9sA 151 88.50 c.47.1.10 133168 1v0wA 506 88.96 d.136.1.2,d.136.1.2 108220,108221 2rauA 354 89.06 2o7tA 199 89.32 2hytA 197 89.86