# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 6.47e-64 2iagA 482 1.56e-63 3b6hA 498 2.52e-63 3c6gA 479 5.34e-63 1po5A 476 5.41e-63 a.104.1.1 94963 1tqnA 486 1.31e-62 a.104.1.1 107238 1zo4A 473 1.97e-62 2hi4A 495 2.34e-62 1nr6A 473 4.09e-62 a.104.1.1 92085 2ve3A 444 8.05e-62 2ij2A 470 8.30e-62 a.104.1.1 137449 1r9oA 477 1.23e-61 a.104.1.1 104878 1bu7A 455 1.37e-61 a.104.1.1 18937 1jmeA 455 1.67e-61 a.104.1.1 66885 1jpzA 473 1.82e-61 a.104.1.1 67069 1ea1A 455 2.05e-61 a.104.1.1 18970 3b98A 475 5.46e-61 1dt6A 473 1.20e-60 a.104.1.1 18977 1h5zA 455 2.07e-60 a.104.1.1 90622 1u13A 455 4.33e-60 a.104.1.1 107578 1x8vA 455 6.28e-60 a.104.1.1 114968 2cibA 455 4.79e-58 1izoA 417 8.03e-54 a.104.1.1 83851 1cptA 428 1.89e-53 a.104.1.1 18968 1cpt 412 9.06e-53 1qmqA 414 1.83e-52 a.104.1.1 18907 1dz4A 414 3.94e-52 a.104.1.1 18903 1phd 414 8.05e-52 2zbxA 412 1.14e-51 3bujA 397 3.65e-51 1jipA 403 4.38e-51 a.104.1.1 66748 2d0eA 407 5.33e-51 1cmnA 402 6.39e-51 a.104.1.1 18958 2d09A 407 8.60e-51 1n97A 389 1.21e-50 a.104.1.1 80335 1rom 403 1.34e-50 1eupA 403 1.43e-50 a.104.1.1 18967 2z3tA 425 1.67e-50 1jfbA 404 1.71e-50 a.104.1.1 66624 1z8oA 404 3.24e-50 a.104.1.1 124722 1f24A 402 5.69e-50 a.104.1.1 18953 1gwiA 411 1.55e-49 a.104.1.1 76364 1q5dA 419 3.14e-49 a.104.1.1 95891 1odoA 408 2.27e-47 a.104.1.1 92783 1s1fA 406 6.38e-47 a.104.1.1 112008 1yrcA 414 8.51e-47 a.104.1.1 123917 3bdzA 397 1.09e-46 1lfkA 398 1.87e-46 a.104.1.1 77926 1n40A 396 4.48e-46 a.104.1.1 79977 2uuqA 414 7.17e-46 2rfbA 343 1.34e-45 1t2bA 397 2.39e-45 1uedA 406 4.82e-45 a.104.1.1 99256 1io7A 368 3.89e-44 a.104.1.1 18971 1f4tA 368 4.48e-44 a.104.1.1 18973 2fr7A 412 2.22e-40 1a6i 217 1.607 2scpA 174 3.316 a.39.1.5 17256 2is6A 680 4.092 2of7A 260 6.002 2dg7A 195 10.74 1jyeA 349 10.76 c.93.1.1 67455 2zb9A 214 12.34 2c1lA 358 12.74 3b81A 203 14.40 2i10A 202 16.58 a.4.1.9,a.121.1.1 136960,136961 1zcbA 362 19.24 a.66.1.1,c.37.1.8 124901,124902 1pscA 365 20.50 c.1.9.3 29058 1pbgA 468 23.31 c.1.8.4 28946 3craA 265 23.37 1pjrA 724 23.62 c.37.1.19,c.37.1.19 32391,32392 1f20A 435 24.14 b.43.4.1,c.25.1.4 64932,64933 3crjA 199 25.42 2yy8A 201 25.77 1jf0A 195 25.82 a.39.1.5 62926 2bo9A 308 27.04 c.56.5.1 128897 1hqvA 191 27.30 a.39.1.8 61160 1i0dA 332 27.76 c.1.9.3 61487 2parA 201 28.23 1eywA 331 29.51 c.1.9.3 29057 1qguB 519 32.28 c.92.2.3 35626 3cjsB 72 33.01 2ggtA 164 33.41 c.47.1.10 135156 1kyzA 365 33.91 a.4.5.29,c.66.1.12 73312,73313 2qtzA 539 34.91 1bs2A 607 39.37 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 1oneA 436 39.51 c.1.11.1,d.54.1.1 29200,38844 1z5rA 306 40.02 c.56.5.1 124488 1t15A 214 40.25 c.15.1.3,c.15.1.3 99067,99068 1gsaA 316 41.49 c.30.1.3,d.142.1.1 31718,41477 1i58A 189 41.56 d.122.1.3 61773 1bf6A 291 42.06 c.1.9.3 29065 1dhs 344 43.12 2rasA 212 44.33 1w2xA 758 44.70 c.14.1.4,c.14.1.4 109134,109135 2fymA 431 47.16 c.1.11.1,d.54.1.1 134379,134380 2rauA 354 50.41 2hyxA 352 57.85 1p9bA 442 58.16 c.37.1.10 94385 2iekA 200 58.38 1sjyA 159 58.92 d.113.1.1 98900 1omrA 201 59.05 a.39.1.5 93349 1b16A 254 60.00 c.2.1.2 29875 2e3bA 344 61.79 a.93.1.1 132024 2fq4A 192 62.29 a.4.1.9,a.121.1.1 133937,133938 1iseA 185 66.50 d.67.3.1 90691 2nxnB 147 67.09 1ni4A 365 67.41 c.36.1.11 85728 2p67A 341 68.43 3bq3A 270 68.75 2hytA 197 69.38 1pfvA 551 69.94 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1w6kA 732 71.44 a.102.4.2,a.102.4.2 114271,114272 1ha1 184 74.04 1ev0A 58 74.85 d.71.1.1 39594 2rebA 352 74.94 c.37.1.11,d.48.1.1 32282,38767 1jf2A 195 75.14 a.39.1.5 62930 1k8uA 90 76.92 a.39.1.2 72181 1qu7A 227 77.95 h.4.5.1 45789 3cdlA 203 78.75 1i5nA 146 79.34 a.24.10.3 61805 1floA 422 79.37 a.60.9.1,d.163.1.1 18106,42166 1q08A 99 81.13 a.6.1.3 95497 2p25A 126 81.85 2fb2A 340 84.94 2pbxA 203 85.70 2ntxA 365 86.87 2i5eA 211 87.05 1binA 143 87.34 a.1.1.2 15231