# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2iagA 482 7.28e-65 2fdvA 476 7.66e-65 3b6hA 498 1.09e-64 1tqnA 486 5.81e-64 a.104.1.1 107238 1po5A 476 6.40e-64 a.104.1.1 94963 3c6gA 479 9.59e-64 2hi4A 495 1.34e-63 1zo4A 473 2.30e-63 2ve3A 444 3.60e-63 1nr6A 473 5.89e-63 a.104.1.1 92085 1dt6A 473 7.71e-63 a.104.1.1 18977 2ij2A 470 1.03e-62 a.104.1.1 137449 1r9oA 477 1.22e-62 a.104.1.1 104878 1ea1A 455 2.94e-62 a.104.1.1 18970 1jpzA 473 3.10e-62 a.104.1.1 67069 1bu7A 455 3.28e-62 a.104.1.1 18937 1jmeA 455 3.41e-62 a.104.1.1 66885 3b98A 475 6.55e-62 1h5zA 455 1.27e-61 a.104.1.1 90622 1u13A 455 3.00e-61 a.104.1.1 107578 1x8vA 455 6.44e-61 a.104.1.1 114968 2cibA 455 4.38e-59 1izoA 417 2.03e-55 a.104.1.1 83851 1cptA 428 1.04e-54 a.104.1.1 18968 1cpt 412 4.24e-54 1qmqA 414 1.78e-53 a.104.1.1 18907 1phd 414 2.69e-53 1dz4A 414 2.82e-53 a.104.1.1 18903 2zbxA 412 1.20e-52 1cmnA 402 5.21e-52 a.104.1.1 18958 2d0eA 407 9.85e-52 1jipA 403 1.11e-51 a.104.1.1 66748 1jfbA 404 1.15e-51 a.104.1.1 66624 3bujA 397 1.31e-51 1rom 403 1.58e-51 2d09A 407 1.96e-51 1n97A 389 2.30e-51 a.104.1.1 80335 2z3tA 425 2.50e-51 1f24A 402 3.97e-51 a.104.1.1 18953 1eupA 403 4.48e-51 a.104.1.1 18967 1z8oA 404 1.29e-50 a.104.1.1 124722 1q5dA 419 3.32e-50 a.104.1.1 95891 1gwiA 411 5.13e-50 a.104.1.1 76364 1yrcA 414 3.15e-48 a.104.1.1 123917 1s1fA 406 9.47e-48 a.104.1.1 112008 1odoA 408 1.47e-47 a.104.1.1 92783 1lfkA 398 2.68e-47 a.104.1.1 77926 3bdzA 397 3.51e-47 1n40A 396 1.03e-46 a.104.1.1 79977 2uuqA 414 1.46e-46 2rfbA 343 2.10e-46 1uedA 406 2.39e-46 a.104.1.1 99256 1t2bA 397 1.82e-45 1f4tA 368 1.89e-45 a.104.1.1 18973 1io7A 368 2.97e-45 a.104.1.1 18971 2fr7A 412 9.51e-42 1a6i 217 2.129 2of7A 260 3.859 2zb9A 214 6.836 3b81A 203 9.537 1jyeA 349 10.80 c.93.1.1 67455 2scpA 174 12.33 a.39.1.5 17256 1f20A 435 13.54 b.43.4.1,c.25.1.4 64932,64933 1pscA 365 14.12 c.1.9.3 29058 1w6kA 732 14.25 a.102.4.2,a.102.4.2 114271,114272 2c1lA 358 14.74 1omrA 201 16.45 a.39.1.5 93349 3crjA 199 17.27 2dg7A 195 18.32 1pjrA 724 18.86 c.37.1.19,c.37.1.19 32391,32392 2bo9A 308 19.45 c.56.5.1 128897 2rebA 352 20.09 c.37.1.11,d.48.1.1 32282,38767 1bs2A 607 22.42 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 1z5rA 306 22.78 c.56.5.1 124488 1hqvA 191 23.24 a.39.1.8 61160 2pbxA 203 23.79 2hyxA 352 24.11 1eywA 331 25.40 c.1.9.3 29057 1i0dA 332 26.16 c.1.9.3 61487 2i49A 429 26.99 1qguB 519 29.12 c.92.2.3 35626 2iw0A 254 30.41 c.6.2.3 137737 1qpzA 340 32.75 a.35.1.5,c.93.1.1 17097,35673 2i10A 202 32.88 a.4.1.9,a.121.1.1 136960,136961 1njgA 250 35.97 c.37.1.20 85785 1jf0A 195 36.51 a.39.1.5 62926 2parA 201 36.61 2ggtA 164 38.52 c.47.1.10 135156 1ni4A 365 38.86 c.36.1.11 85728 1t2aA 375 40.43 c.2.1.2 99078 1bf6A 291 41.73 c.1.9.3 29065 1vpwA 340 43.35 a.35.1.5,c.93.1.1 17087,35680 2i7xA 717 43.36 1e8xA 961 43.53 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 1kb9A 431 44.95 d.185.1.1,d.185.1.1 77311,77312 3craA 265 45.98 1gm7A 209 46.39 d.153.1.2 65302 1f0jA 377 47.02 a.211.1.2 19346 1zcbA 362 49.04 a.66.1.1,c.37.1.8 124901,124902 2g29A 417 49.17 1ha1 184 49.77 1bavA 309 50.10 c.56.5.1 33806 1iseA 185 50.22 d.67.3.1 90691 2bs3A 656 50.54 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1ev0A 58 50.57 d.71.1.1 39594 1ek8A 185 51.40 d.67.3.1 59444 2raeA 207 51.85 1rpnA 335 52.81 c.2.1.2 97708 1z7bA 358 52.92 c.2.1.2 124599 1uqwA 509 53.81 c.94.1.1 99799 2rauA 354 53.83 1kczA 413 54.65 c.1.11.2,d.54.1.1 68451,68452 3cjdA 198 55.49 1gsaA 316 55.70 c.30.1.3,d.142.1.1 31718,41477 2fncA 381 56.66 2qtzA 539 57.17 2pzmA 330 57.48 1dd9A 338 57.61 e.13.1.1 43254 1dbqA 289 57.85 c.93.1.1 35666 2iekA 200 59.76 1kyzA 365 60.04 a.4.5.29,c.66.1.12 73312,73313 2glcA 342 62.40 1l3kA 196 64.72 d.58.7.1,d.58.7.1 73539,73540 2o7tA 199 67.13 1dd5A 185 68.49 d.67.3.1 39564 1t15A 214 68.83 c.15.1.3,c.15.1.3 99067,99068 2e3bA 344 69.41 a.93.1.1 132024 1m4lA 307 69.73 c.56.5.1 78604 2fq4A 192 70.09 a.4.1.9,a.121.1.1 133937,133938 1x19A 359 70.71 2rasA 212 71.59 1uehA 253 72.81 c.101.1.1 99259 1e7uA 961 72.90 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1oneA 436 74.88 c.1.11.1,d.54.1.1 29200,38844 1dtdA 303 75.09 c.56.5.1 33823 2ctc 307 76.63 2yy7A 312 77.38 1b16A 254 80.27 c.2.1.2 29875 3c5mA 396 82.15 1a9cA 221 83.78 d.96.1.1 40602 2z1mA 345 84.50 1is1A 185 85.35 d.67.3.1 83704 1rktA 205 86.46 a.4.1.9,a.121.1.1 97623,97624 2hrzA 342 87.22 2p36A 335 87.27 2vprA 207 87.44 1zcaA 359 87.47 a.66.1.1,c.37.1.8 124897,124898 1t56A 216 88.80 a.4.1.9,a.121.1.1 106428,106429 1jbaA 204 89.41 a.39.1.5 17330