# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 9.87e-61 2iagA 482 1.32e-60 3b6hA 498 2.50e-60 3c6gA 479 4.99e-60 1po5A 476 9.80e-60 a.104.1.1 94963 1tqnA 486 1.09e-59 a.104.1.1 107238 1zo4A 473 1.25e-59 2hi4A 495 2.06e-59 2ve3A 444 2.51e-59 2ij2A 470 3.57e-59 a.104.1.1 137449 1nr6A 473 5.36e-59 a.104.1.1 92085 1r9oA 477 9.00e-59 a.104.1.1 104878 1bu7A 455 1.16e-58 a.104.1.1 18937 1jpzA 473 1.31e-58 a.104.1.1 67069 1jmeA 455 1.43e-58 a.104.1.1 66885 1dt6A 473 2.21e-58 a.104.1.1 18977 1ea1A 455 3.18e-58 a.104.1.1 18970 3b98A 475 4.01e-58 1h5zA 455 1.85e-57 a.104.1.1 90622 1u13A 455 3.03e-57 a.104.1.1 107578 1x8vA 455 6.44e-57 a.104.1.1 114968 2cibA 455 2.07e-55 1izoA 417 1.18e-51 a.104.1.1 83851 1cptA 428 2.48e-51 a.104.1.1 18968 1cpt 412 1.08e-50 1qmqA 414 7.08e-50 a.104.1.1 18907 1phd 414 9.98e-50 1dz4A 414 1.04e-49 a.104.1.1 18903 2zbxA 412 4.94e-49 1cmnA 402 9.02e-49 a.104.1.1 18958 1jfbA 404 1.22e-48 a.104.1.1 66624 2d0eA 407 1.34e-48 1rom 403 1.63e-48 1n97A 389 1.79e-48 a.104.1.1 80335 1jipA 403 1.85e-48 a.104.1.1 66748 2d09A 407 2.24e-48 3bujA 397 3.01e-48 2z3tA 425 3.42e-48 1f24A 402 4.47e-48 a.104.1.1 18953 1eupA 403 5.70e-48 a.104.1.1 18967 1z8oA 404 1.62e-47 a.104.1.1 124722 1gwiA 411 2.82e-47 a.104.1.1 76364 1q5dA 419 7.45e-47 a.104.1.1 95891 1yrcA 414 2.50e-45 a.104.1.1 123917 1s1fA 406 5.45e-45 a.104.1.1 112008 1odoA 408 7.68e-45 a.104.1.1 92783 1lfkA 398 2.32e-44 a.104.1.1 77926 3bdzA 397 3.32e-44 1n40A 396 5.63e-44 a.104.1.1 79977 2rfbA 343 6.15e-44 2uuqA 414 6.67e-44 1uedA 406 3.68e-43 a.104.1.1 99256 1f4tA 368 1.02e-42 a.104.1.1 18973 1t2bA 397 1.11e-42 1io7A 368 1.39e-42 a.104.1.1 18971 2fr7A 412 3.24e-39 2of7A 260 1.788 2zb9A 214 2.188 3b81A 203 2.251 1a6i 217 2.906 1pjrA 724 5.760 c.37.1.19,c.37.1.19 32391,32392 2pbxA 203 6.546 2scpA 174 8.692 a.39.1.5 17256 3crjA 199 10.30 1pscA 365 13.16 c.1.9.3 29058 2parA 201 15.26 1hqvA 191 16.24 a.39.1.8 61160 2dg7A 195 16.25 2rasA 212 16.62 2bo9A 308 17.40 c.56.5.1 128897 1i0dA 332 18.29 c.1.9.3 61487 1bs2A 607 18.35 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 2hyxA 352 20.09 1eywA 331 20.29 c.1.9.3 29057 1bf6A 291 21.77 c.1.9.3 29065 2i10A 202 22.74 a.4.1.9,a.121.1.1 136960,136961 1jf0A 195 23.52 a.39.1.5 62926 1w6kA 732 24.03 a.102.4.2,a.102.4.2 114271,114272 1ev0A 58 24.11 d.71.1.1 39594 2is6A 680 25.26 2raeA 207 25.56 2c1lA 358 25.83 1ni4A 365 26.94 c.36.1.11 85728 1f20A 435 29.53 b.43.4.1,c.25.1.4 64932,64933 2ggtA 164 30.36 c.47.1.10 135156 1z5rA 306 30.96 c.56.5.1 124488 2o7tA 199 31.16 1zcbA 362 31.90 a.66.1.1,c.37.1.8 124901,124902 1qguB 519 32.87 c.92.2.3 35626 1dpeA 507 33.02 c.94.1.1 35799 1njgA 250 34.62 c.37.1.20 85785 1vpwA 340 35.42 a.35.1.5,c.93.1.1 17087,35680 1rktA 205 39.60 a.4.1.9,a.121.1.1 97623,97624 1i58A 189 42.17 d.122.1.3 61773 3craA 265 42.33 1t33A 224 43.26 a.4.1.9,a.121.1.1 106295,106296 1omrA 201 43.67 a.39.1.5 93349 1pbgA 468 46.44 c.1.8.4 28946 1z7bA 358 46.78 c.2.1.2 124599 3cjsB 72 49.08 2qtzA 539 52.18 1ek8A 185 52.67 d.67.3.1 59444 1w7jB 151 52.95 a.39.1.5 120690 1b3uA 588 54.99 a.118.1.2 19135 2qjvA 270 55.02 2e3bA 344 56.34 a.93.1.1 132024 1kczA 413 57.47 c.1.11.2,d.54.1.1 68451,68452 1iseA 185 57.50 d.67.3.1 90691 2gu9A 113 57.58 4cpvA 108 57.71 a.39.1.4 17198 2iekA 200 57.72 2fncA 381 59.44 1jyeA 349 60.51 c.93.1.1 67455 1gsaA 316 61.83 c.30.1.3,d.142.1.1 31718,41477 1qrjB 199 63.24 a.28.3.1 16952 1x19A 359 64.80 1gm7A 209 67.70 d.153.1.2 65302 1zcaA 359 68.69 a.66.1.1,c.37.1.8 124897,124898 1v0wA 506 68.69 d.136.1.2,d.136.1.2 108220,108221 3cjdA 198 69.39 1zkgA 212 70.10 a.4.1.9,a.121.1.1 125194,125195 1e8xA 961 70.23 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 1dd5A 185 73.87 d.67.3.1 39564 2ccmA 191 74.64 2vprA 207 75.48 2fq4A 192 76.54 a.4.1.9,a.121.1.1 133937,133938 2rauA 354 77.53 1o4tA 133 78.45 b.82.1.9 86622 2d2jA 329 78.81 c.1.9.3 131175 1oneA 436 79.82 c.1.11.1,d.54.1.1 29200,38844 1pfvA 551 80.65 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2p25A 126 81.37 1w9yA 319 81.42 b.82.2.1 120801 1qpzA 340 83.72 a.35.1.5,c.93.1.1 17097,35673 1qpaA 345 84.15 a.93.1.1 18585 2gm6A 208 85.28 2q5iA 691 87.13 1fjmA 330 89.56 d.159.1.3 42082