# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 5.58e-64 2iagA 482 6.15e-63 1nr6A 473 7.84e-63 a.104.1.1 92085 3b6hA 498 1.05e-62 3c6gA 479 1.79e-62 2ve3A 444 4.08e-62 2hi4A 495 5.14e-62 1tqnA 486 5.31e-62 a.104.1.1 107238 1r9oA 477 1.03e-61 a.104.1.1 104878 1zo4A 473 1.10e-61 1po5A 476 1.98e-61 a.104.1.1 94963 1dt6A 473 3.63e-61 a.104.1.1 18977 1bu7A 455 4.29e-61 a.104.1.1 18937 2ij2A 470 9.51e-61 a.104.1.1 137449 1ea1A 455 9.99e-61 a.104.1.1 18970 1jmeA 455 7.19e-60 a.104.1.1 66885 3b98A 475 8.05e-60 1jpzA 473 9.54e-60 a.104.1.1 67069 1h5zA 455 3.51e-59 a.104.1.1 90622 1x8vA 455 4.65e-59 a.104.1.1 114968 1u13A 455 4.75e-59 a.104.1.1 107578 2cibA 455 3.97e-57 1cptA 428 1.32e-53 a.104.1.1 18968 1izoA 417 2.16e-53 a.104.1.1 83851 1cpt 412 1.17e-52 3bujA 397 3.54e-52 1phd 414 1.13e-51 1dz4A 414 1.46e-51 a.104.1.1 18903 1qmqA 414 1.49e-51 a.104.1.1 18907 2zbxA 412 3.51e-51 2d0eA 407 4.31e-50 1cmnA 402 4.93e-50 a.104.1.1 18958 1rom 403 7.22e-50 2d09A 407 8.12e-50 1jipA 403 8.20e-50 a.104.1.1 66748 1n97A 389 8.28e-50 a.104.1.1 80335 1jfbA 404 1.22e-49 a.104.1.1 66624 1z8oA 404 3.13e-49 a.104.1.1 124722 1gwiA 411 3.97e-49 a.104.1.1 76364 1eupA 403 4.37e-49 a.104.1.1 18967 1f24A 402 5.10e-49 a.104.1.1 18953 2z3tA 425 7.85e-49 1yrcA 414 7.91e-48 a.104.1.1 123917 1q5dA 419 2.31e-47 a.104.1.1 95891 1odoA 408 2.58e-47 a.104.1.1 92783 1lfkA 398 2.35e-46 a.104.1.1 77926 1s1fA 406 2.44e-46 a.104.1.1 112008 3bdzA 397 5.77e-46 1n40A 396 6.39e-46 a.104.1.1 79977 1uedA 406 1.34e-45 a.104.1.1 99256 2rfbA 343 1.86e-45 1t2bA 397 4.52e-45 2uuqA 414 5.86e-45 1f4tA 368 2.15e-43 a.104.1.1 18973 1io7A 368 3.95e-43 a.104.1.1 18971 2fr7A 412 2.91e-41 2ciwA 299 3.589 a.39.3.1,a.39.3.1 130502,130503 2v0cA 878 3.897 1h3nA 878 5.917 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2bs2A 660 8.882 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 2pt0A 340 10.31 1pfvA 551 12.08 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1kqfA 1015 13.13 b.52.2.2,c.81.1.1 72871,72872 2fb2A 340 14.13 3b81A 203 16.91 2bs3A 656 18.87 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 3c5mA 396 20.98 1rrmA 386 25.82 e.22.1.2 105081 1c7nA 399 31.79 c.67.1.3 34413 1ugpA 203 33.21 d.149.1.1 107831 1o2dA 371 34.40 e.22.1.2 86591 2qtzA 539 38.11 2gy9D 204 40.00 1al3A 324 40.08 c.94.1.1 35835 1dklA 410 40.11 c.60.1.2 33996 1uhvA 500 40.25 b.71.1.2,c.1.8.3 99402,99403 1r8sE 203 40.54 a.118.3.1 97248 2uubD 209 44.69 d.66.1.2 139935 2ikqA 270 45.47 1spvA 184 46.56 c.50.1.2 98957 1f4lA 551 46.92 a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 2dorA 311 48.26 c.1.4.1 28593 1ay0A 680 49.57 c.36.1.10,c.36.1.6,c.48.1.1 31823,31824,33100 2hyxA 352 50.57 1k8kA 418 51.58 c.55.1.1,c.55.1.1 68305,68306 1ireA 204 53.19 d.149.1.1 76769 2hytA 197 57.83 2ebdA 309 58.96 1aye 401 59.97 1zj8A 566 61.45 1wmjA 130 61.69 2b43A 526 62.85 1g5hA 454 63.89 c.51.1.1,d.104.1.1 60270,60271 1f20A 435 64.00 b.43.4.1,c.25.1.4 64932,64933 2i7xA 717 65.38 1a0i 348 68.91 1lci 550 70.15 1tv8A 340 70.96 c.1.28.3 107352 2vqeD 209 71.77 2ggtA 164 71.92 c.47.1.10 135156 1su0B 159 72.54 d.224.1.2 106015 1pdnC 128 74.61 a.4.1.5 16047 2ousA 331 75.59 2d2rA 245 78.05 1vljA 407 78.36 e.22.1.2 108832 2iutA 574 79.51 2gv5A 161 82.15 1pbgA 468 83.02 c.1.8.4 28946 1oj7A 408 84.98 e.22.1.2 103971 2ahjA 206 88.44 d.149.1.1 41772