# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 4.08e-48 1nr6A 473 1.60e-47 a.104.1.1 92085 3c6gA 479 6.07e-47 1zo4A 473 1.25e-46 1r9oA 477 1.31e-46 a.104.1.1 104878 2hi4A 495 1.90e-46 1dt6A 473 4.15e-46 a.104.1.1 18977 1bu7A 455 5.20e-46 a.104.1.1 18937 1jpzA 473 7.00e-46 a.104.1.1 67069 2ij2A 470 1.60e-45 a.104.1.1 137449 1po5A 476 2.03e-45 a.104.1.1 94963 1tqnA 486 5.98e-45 a.104.1.1 107238 2ve3A 444 6.86e-45 3b6hA 498 7.03e-45 1jmeA 455 8.37e-45 a.104.1.1 66885 2iagA 482 1.75e-44 1ea1A 455 2.89e-44 a.104.1.1 18970 3b98A 475 3.60e-44 1x8vA 455 4.40e-44 a.104.1.1 114968 1u13A 455 1.20e-43 a.104.1.1 107578 1h5zA 455 1.81e-43 a.104.1.1 90622 2cibA 455 1.53e-42 1izoA 417 1.22e-38 a.104.1.1 83851 2zbxA 412 2.46e-36 1qmqA 414 2.95e-36 a.104.1.1 18907 1z8oA 404 3.24e-36 a.104.1.1 124722 1jipA 403 3.61e-36 a.104.1.1 66748 1cpt 412 4.57e-36 1cptA 428 4.74e-36 a.104.1.1 18968 1dz4A 414 1.77e-35 a.104.1.1 18903 1phd 414 1.83e-35 1eupA 403 1.90e-35 a.104.1.1 18967 1f24A 402 6.19e-35 a.104.1.1 18953 1odoA 408 1.05e-34 a.104.1.1 92783 3bujA 397 1.30e-34 1jfbA 404 1.52e-34 a.104.1.1 66624 1cmnA 402 1.65e-34 a.104.1.1 18958 1n97A 389 2.26e-34 a.104.1.1 80335 1gwiA 411 2.65e-34 a.104.1.1 76364 1yrcA 414 6.96e-34 a.104.1.1 123917 2d09A 407 7.88e-34 1rom 403 8.97e-34 3bdzA 397 9.84e-34 1t2bA 397 1.15e-33 1q5dA 419 1.92e-33 a.104.1.1 95891 2d0eA 407 2.82e-33 2z3tA 425 5.93e-33 1s1fA 406 1.06e-32 a.104.1.1 112008 1n40A 396 5.55e-31 a.104.1.1 79977 1lfkA 398 8.02e-31 a.104.1.1 77926 2uuqA 414 5.62e-30 1io7A 368 8.86e-30 a.104.1.1 18971 2rfbA 343 9.21e-30 1f4tA 368 1.35e-28 a.104.1.1 18973 1uedA 406 1.99e-28 a.104.1.1 99256 2fr7A 412 1.98e-27 2h21A 440 2.388 a.166.1.1,b.85.7.3 135976,135977 1ywfA 296 2.582 c.45.1.5 124144 1rwhA 757 3.609 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1cydA 244 5.649 c.2.1.2 29825 1q7gA 359 6.713 c.2.1.3,d.81.1.2 96038,96039 1mo9A 523 6.767 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2iyaA 424 9.736 1qqtA 551 10.62 a.27.1.1,c.26.1.1,g.41.1.1 16923,31590,45175 2gh9A 386 11.15 1lwjA 441 11.61 b.71.1.1,c.1.8.1 74303,74304 1pujA 282 14.31 c.37.1.8 88294 1hr6A 475 14.35 d.185.1.1,d.185.1.1 61164,61165 3bixA 574 14.77 2f2hA 773 15.25 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1vflA 356 15.69 c.1.9.1 120041 2c1vA 338 16.57 2q02A 272 17.89 1o5zA 442 20.19 c.59.1.2,c.72.2.2 92530,92531 1csjA 531 21.07 e.8.1.4 43120 2cycA 375 21.80 2hmcA 344 22.45 1p0iA 529 23.04 c.69.1.1 93867 1qe3A 489 23.45 c.69.1.1 34630 1dklA 410 23.94 c.60.1.2 33996 1topA 162 24.04 a.39.1.5 17223 1qg6A 261 24.40 c.2.1.2 29919 2agtA 319 24.65 1c14A 262 25.07 c.2.1.2 29927 1lvaA 258 25.33 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1vd6A 224 25.43 c.1.18.3 119991 1dd9A 338 28.03 e.13.1.1 43254 1r7aA 504 28.08 b.71.1.1,c.1.8.1 97192,97193 1jubA 311 28.57 c.1.4.1 90908 1frb 315 28.66 1ncx 162 28.82 2qmcA 377 29.00 1xsjA 778 29.81 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1uluA 261 29.99 c.2.1.2 113292 1din 236 30.19 2zdrA 349 30.78 1ukcA 522 32.22 c.69.1.17 107911 2o2cA 613 32.45 1k7yA 577 32.75 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 2vjxA 846 33.07 1xk7A 408 34.34 c.123.1.1 122071 1gesA 450 34.59 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1ggvA 232 34.67 c.69.1.9 34683 2pgfA 371 35.43 1fnnA 389 35.75 a.4.5.11,c.37.1.20 16129,32426 2cybA 323 37.06 2a4aA 281 39.02 c.1.10.1 126150 1cqwA 295 39.89 c.69.1.8 34679 2abqA 306 40.10 c.72.1.1 126528 1us0A 316 41.22 c.1.7.1 99850 2b4gA 317 42.00 c.1.4.1 127829 1ituA 369 42.25 c.1.9.7 71423 1njrA 284 43.65 c.50.1.2 103858 2fv2A 268 44.19 1xuuA 349 44.39 b.85.1.1,c.1.10.6 116067,116068 4tmkA 213 44.42 c.37.1.1 31930 1n3lA 372 45.23 c.26.1.1 79966 2cyaA 364 45.98 1ea9C 583 46.46 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2oo6A 409 47.04 1zk7A 467 47.42 1bn6A 294 47.48 c.69.1.8 34678 2sqcA 631 48.27 a.102.4.2,a.102.4.2 18854,18855 1wn1A 356 48.33 2je8A 848 48.37 2dorA 311 49.03 c.1.4.1 28593 2rgmA 481 49.15 1qwoA 442 49.26 c.60.1.2 104620 1rqbA 539 49.32 a.5.7.2,c.1.10.5 105057,105058 1tr1A 447 49.39 c.1.8.4 28957 1f4lA 551 50.70 a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 2vr4A 846 51.02 1qsgA 265 51.74 c.2.1.2 29935 1oaaA 259 52.48 c.2.1.2 29829 2v6oA 596 53.17 1mh3A 421 53.24 a.4.1.1,c.94.1.1 79112,79113 1fkx 349 53.28 1i6pA 220 53.65 c.53.2.1 61848 2ag5A 246 53.76 c.2.1.2 126719 1y42X 392 53.95 1x1eA 239 54.65 2bceA 585 54.81 c.69.1.1 34625 1knwA 425 55.27 b.49.2.3,c.1.6.1 90969,90970 1o7fA 469 55.63 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2pmlX 348 56.10 1a4mA 349 56.34 c.1.9.1 29014 1woyA 500 57.35 a.27.1.1,c.26.1.1 121130,121131 1j0mA 752 58.84 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 2ccjA 205 58.91 2ejwA 332 59.07 1pfvA 551 60.11 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1sxjC 340 61.41 a.80.1.1,c.37.1.20 106085,106086 2e3zA 465 61.41 1ebuA 358 61.83 c.2.1.3,d.81.1.2 30035,39950 1lv7A 257 61.86 c.37.1.20 78232 1aogA 485 62.47 c.3.1.5,c.3.1.5,d.87.1.1 30517,30518,40190 1abwA 283 62.71 a.1.1.2,a.1.1.2 15288,15289 1sxjA 511 63.19 a.80.1.1,c.37.1.20 106081,106082 2qp2A 511 63.31 1enp 312 63.49 2a2aA 321 63.78 1fpqA 372 63.86 a.4.5.29,c.66.1.12 59947,59948 2gduA 504 63.95 b.71.1.1,c.1.8.1 135032,135033 1eqnA 321 63.99 e.13.1.1 43256 1iqcA 308 64.77 a.3.1.5,a.3.1.5 66266,66267 1jk0A 419 64.84 a.25.1.2 63142 1t4hA 290 65.18 d.144.1.7 106420 2gh1A 301 66.97 c.66.1.49 135170 1zaiA 363 67.26 c.1.10.1 124828 2cfuA 658 68.22 1wcgA 464 68.68 c.1.8.4 120888 1wx1A 335 68.82 1zuaX 317 69.07 1gvfA 286 69.13 c.1.10.2 70599 2bs9A 503 69.44 b.71.1.2,c.1.8.3 129062,129063 1j33A 335 70.02 c.39.1.1 77069 2ekpA 239 70.34 1ggzA 148 71.52 a.39.1.5 70176 1fecA 490 71.83 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1j1uA 306 71.89 c.26.1.1 83980 2h7cA 542 72.04 c.69.1.1 136207 1ea5A 537 72.22 c.69.1.1 34592 1e70M 501 73.38 c.1.8.4 28926 1og6A 298 74.39 c.1.7.1 86984 2nqoA 376 74.48 d.153.1.6 138473 1auoA 218 74.53 c.69.1.14 34716 1e4iA 447 74.94 c.1.8.4 59225 2jahA 247 75.18 1zmdA 474 77.13 2obhA 143 77.56 1vfgA 390 77.87 a.173.1.1,d.218.1.4 108570,108571 2i4iA 417 78.19 1ads 315 78.25 1iuqA 367 78.28 c.112.1.1 90703 1rd5A 262 78.51 c.1.2.4 111772 2dtxA 264 79.01 3bptA 363 79.51 2h8oA 335 80.12 2nv2A 294 80.22 1zi8A 236 80.87 1r8sE 203 81.59 a.118.3.1 97248 1kl1A 419 83.68 c.67.1.4 72663 2j07A 420 83.77 a.99.1.1,c.28.1.1 137891,137892 2ao0A 324 84.89 1jf2A 195 85.01 a.39.1.5 62930 2grmA 317 85.03 2b6cA 220 85.41 a.118.1.17 127983 2dsjA 423 86.28 1eejA 216 86.56 c.47.1.9,d.17.3.1 33057,38071 1goxA 369 88.67 c.1.4.1 28607 1u7kA 131 89.51 a.73.1.1 113087 2fgeA 995 89.97 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433