# List of top-scoring protein chains for T0431.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 2.21e-44 a.104.1.1 107238 1w0fA 485 2.24e-44 a.104.1.1 108987 2nnjA 476 2.42e-42 2hi4A 495 2.83e-42 2q6nA 478 6.37e-42 1suoA 476 6.68e-42 a.104.1.1 106026 1po5A 476 9.29e-42 a.104.1.1 94963 1og5A 475 1.73e-41 a.104.1.1 86982 1r9oA 477 3.38e-41 a.104.1.1 104878 1nr6A 473 3.79e-41 a.104.1.1 92085 3c6gA 479 6.89e-41 2p85A 476 8.91e-40 2fdvA 476 3.22e-39 2pg6A 476 3.47e-39 2pg7A 476 4.63e-39 2pg5A 476 4.63e-39 2ve3A 444 1.21e-38 2f9qA 479 7.50e-38 2uwhA 458 4.69e-35 1bvyA 458 7.04e-35 a.104.1.1 18943 1zoaA 473 7.08e-35 1bu7A 455 7.37e-35 a.104.1.1 18937 1jpzA 473 8.19e-35 a.104.1.1 67069 2ij2A 470 8.86e-35 a.104.1.1 137449 2hpdA 471 8.96e-35 a.104.1.1 18939 1zo4A 473 1.10e-34 2nnbA 471 1.11e-34 1p0wA 455 1.13e-34 a.104.1.1 93878 1yqpA 455 1.40e-34 1p0xA 455 1.43e-34 a.104.1.1 93880 2ij3A 470 1.92e-34 1yqoA 455 2.01e-34 a.104.1.1 123895 1smiA 471 2.05e-34 a.104.1.1 105758 1jmeA 455 2.36e-34 a.104.1.1 66885 2ij4A 470 2.37e-34 1fahA 471 2.50e-34 a.104.1.1 18945 1p0vA 455 4.64e-34 a.104.1.1 93876 1h5zA 455 1.12e-33 a.104.1.1 90622 2cibA 455 1.69e-33 1u13A 455 2.37e-33 a.104.1.1 107578 2vsjA 436 2.93e-32 2cd8A 436 3.06e-32 1z8qA 404 7.00e-30 1z8pA 404 1.34e-29 a.104.1.1 124723 1jipA 403 1.36e-29 a.104.1.1 66748 1z8oA 404 1.58e-29 a.104.1.1 124722 1jioA 403 1.60e-29 a.104.1.1 66747 1eupA 403 2.27e-29 a.104.1.1 18967 2z36A 413 4.83e-29 1odoA 408 5.74e-29 a.104.1.1 92783 2zbyA 412 7.40e-29 2zbxA 412 7.60e-29 1gwiA 411 1.12e-27 a.104.1.1 76364 1cptA 428 5.76e-27 a.104.1.1 18968 3b6hA 498 7.44e-27 1q5dA 419 7.72e-27 a.104.1.1 95891 1pkfA 419 8.02e-27 a.104.1.1 94829 1ehgA 403 9.46e-27 a.104.1.1 18956 1cmnA 402 9.64e-27 a.104.1.1 18958 2iagA 482 1.11e-26 1xqdA 403 1.43e-26 a.104.1.1 115841 1ulwA 402 1.56e-26 a.104.1.1 113296 1ehfA 403 1.85e-26 a.104.1.1 18957 1cmjA 402 1.88e-26 a.104.1.1 18959 1jfbA 404 1.98e-26 a.104.1.1 66624 1gejA 403 2.00e-26 a.104.1.1 18954 1cl6A 402 2.04e-26 a.104.1.1 18960 3bujA 397 2.19e-26 2z3tA 425 2.94e-26 1f25A 402 3.69e-26 a.104.1.1 18952 1f24A 402 5.23e-26 a.104.1.1 18953 1f26A 402 7.66e-26 a.104.1.1 18951 1uedA 406 8.46e-26 a.104.1.1 99256 2d0eA 407 2.36e-25 1s1fA 406 2.39e-25 a.104.1.1 112008 1se6A 406 2.40e-25 2d09A 407 2.59e-25 1t93A 406 2.61e-25 1n97A 389 6.00e-25 a.104.1.1 80335 3b98A 475 7.24e-25 2uuqA 414 1.61e-24 1wiyA 389 5.18e-24 a.104.1.1 114684 2fr7A 412 5.55e-24 1lfkA 398 1.07e-23 a.104.1.1 77926 2nz5A 413 5.16e-23 2dkkA 411 5.36e-23 1io8A 368 8.35e-23 a.104.1.1 62618 1io7A 368 8.74e-23 a.104.1.1 18971 1t2bA 397 4.66e-22 1t85A 414 5.33e-22 a.104.1.1 106650 2h7rA 414 5.38e-22 1c8jA 414 6.64e-22 a.104.1.1 59085 3bdzA 397 6.76e-22 2gqxA 405 6.77e-22 2rfbA 343 6.99e-22 2frzA 414 7.34e-22 a.104.1.1 134001 2a1mA 415 7.70e-22 a.104.1.1 126003 1qmqA 414 7.83e-22 a.104.1.1 18907 2fe6A 421 8.14e-22 a.104.1.1 133324 1iwjA 415 8.16e-22 a.104.1.1 71489 1rf9A 417 8.19e-22 a.104.1.1 111795 2zawA 415 8.26e-22 1p2yA 420 8.27e-22 a.104.1.1 93961 1yrcA 414 8.40e-22 a.104.1.1 123917 1dz4A 414 9.41e-22 a.104.1.1 18903 2ferA 411 1.12e-21 a.104.1.1 133350 2qbnA 421 1.18e-21 2a1nA 415 1.21e-21 2qbmA 421 1.31e-21 6cp4A 414 1.31e-21 a.104.1.1 18924 1iwkA 415 1.39e-21 a.104.1.1 71490 2a1oA 415 1.94e-21 2cp4A 414 2.12e-21 a.104.1.1 18933 1ue8A 367 2.26e-21 a.104.1.1 107781 1gebA 415 2.95e-21 a.104.1.1 18932 1izoA 417 8.41e-21 a.104.1.1 83851 1n40A 396 1.25e-18 a.104.1.1 79977 1cb5A 453 2.499 d.3.1.1 37037 1fs7A 485 2.563 a.138.1.3 19691 3bnjA 485 2.634 2cb5A 453 2.658 d.3.1.1 37035 1fs9A 507 3.324 a.138.1.3 19693 1gr0A 367 12.03 c.2.1.3,d.81.1.3 70379,70380 2uxuA 210 13.23 1xp8A 366 17.29 c.37.1.11,d.48.1.1 115735,115736 1sxjD 353 19.58 a.80.1.1,c.37.1.20 106087,106088 7aatA 401 24.83 c.67.1.1 34250 1akaA 401 27.30 c.67.1.1 34258 2b9wA 424 33.10 2g8yA 385 33.10 1zcoA 262 42.80 2atmA 331 49.27 1uikA 418 50.52 b.82.1.2,b.82.1.2 107878,107879 2iyfA 430 50.76 2a6hA 315 50.79 d.74.3.1,d.181.1.1 126260,126261 2i87A 364 56.09 2i80A 360 56.24 1zm7A 230 69.33 1q14A 361 69.74 c.31.1.5 95537 1iq0A 592 73.90 a.27.1.1,c.26.1.1,d.67.2.1 66257,66258,66259 1xtkA 390 74.48 c.37.1.19,c.37.1.19 116026,116027 1kskA 234 74.72 d.66.1.5,d.265.1.3 72920,90389 1u5uA 374 77.36 e.5.1.2 113052 2pb2A 420 86.56 1xtjA 386 87.79 c.37.1.19,c.37.1.19 116024,116025